Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14194 Brassica carinata HOM05D001035 ORTHO05D001045 4.5e-55 217.6 105 100.0
C07p21000 Brassica napus HOM05D001035 ORTHO05D001045 1.3e-41 172.9 102 81.4
BolC7t42632H Brassica oleracea HOM05D001035 ORTHO05D001045 1.3e-41 172.9 102 81.4
Sp1g20120 Schrenkiella parvula HOM05D001035 ORTHO05D001045 1.3e-41 172.9 102 82.4
BcaB07g32272 Brassica carinata HOM05D001035 ORTHO05D001045 8.2e-41 170.2 102 78.4
BcaC06g34979 Brassica carinata HOM05D001035 ORTHO05D001045 1.8e-40 169.1 102 79.4
A07p14280 Brassica napus HOM05D001035 ORTHO05D001045 4.1e-40 167.9 102 79.4
BraA07t29185Z Brassica rapa HOM05D001035 ORTHO05D001045 4.1e-40 167.9 102 79.4
BcaB03g11914 Brassica carinata HOM05D001035 ORTHO05D001045 5.3e-40 167.5 102 78.4
BcaC07g39169 Brassica carinata HOM05D001035 ORTHO05D001045 2.6e-39 165.2 102 78.4
C08p21620 Brassica napus HOM05D001035 ORTHO05D001045 2.6e-39 165.2 102 78.4
BolC8t49800H Brassica oleracea HOM05D001035 ORTHO05D001045 2.6e-39 165.2 102 78.4
A08p28460 Brassica napus HOM05D001035 ORTHO05D001045 4.5e-39 164.5 102 76.5
BraA08t34775Z Brassica rapa HOM05D001035 ORTHO05D001045 4.5e-39 164.5 102 76.5
AL1G36150 Arabidopsis lyrata HOM05D001035 ORTHO05D001045 5.9e-39 164.1 102 77.5
CARHR022990 Cardamine hirsuta HOM05D001035 ORTHO05D001045 7.7e-39 163.7 96 81.2
AT1G22620 Arabidopsis thaliana HOM05D001035 ORTHO05D001045 3.8e-38 161.4 102 76.5
Thhalv10006740m.g Eutrema salsugineum HOM05D001035 ORTHO05D001045 3.8e-38 161.4 102 76.5
Carub.0001s2213 Capsella rubella HOM05D001035 ORTHO05D001045 6.5e-38 160.6 102 74.5
Aa31LG7G6510 Aethionema arabicum HOM05D001035 ORTHO05D001045 5.5e-37 157.5 102 73.5
THA.LOC104810575 Tarenaya hassleriana HOM05D001035 ORTHO05D001045 4.5e-31 137.9 93 69.9
C05p21760 Brassica napus HOM05D001035 ORTHO05D001045 7.7e-31 137.1 95 72.6
BcaC05g26190 Brassica carinata HOM05D001035 ORTHO05D001045 2.2e-30 135.6 101 67.3
BolC5t30870H Brassica oleracea HOM05D001035 ORTHO05D001045 2.2e-30 135.6 95 71.6
A09p42140 Brassica napus HOM05D001035 ORTHO05D001045 1.1e-26 123.2 85 74.1
BraA09t39700Z Brassica rapa HOM05D001035 ORTHO05D001045 1.1e-26 123.2 85 74.1
MD15G1408200 Malus domestica HOM05D001035 ORTHO05D001045 1.3e-25 119.8 98 62.2
Thecc.08G188300 Theobroma cacao HOM05D001035 ORTHO05D001045 3.7e-25 118.2 103 58.3
CiPaw.08G002100 Carya illinoinensis HOM05D001035 ORTHO05D001045 4.8e-25 117.9 104 58.7
MD08G1219600 Malus domestica HOM05D001035 ORTHO05D001045 6.3e-25 117.5 104 57.7
CSS0040615 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 8.2e-25 117.1 104 55.8
Gohir.A02G087300 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.1e-24 116.7 103 57.3
GSVIVG01036236001 Vitis vinifera HOM05D001035 ORTHO05D001045 1.4e-24 116.3 104 55.8
Gohir.D02G102100 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.8e-24 115.9 103 56.3
Gorai.005G115800 Gossypium raimondii HOM05D001035 ORTHO05D001045 1.8e-24 115.9 103 56.3
Prupe.1G552900 Prunus persica HOM05D001035 ORTHO05D001045 3.1e-24 115.2 98 60.2
Dinv41743 Davidia involucrata HOM05D001035 ORTHO05D001045 4.1e-24 114.8 104 54.8
FAN13G2816 Fragaria x ananassa HOM05D001035 ORTHO05D001045 5.3e-24 114.4 104 56.7
TWI14G1389 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 7.0e-24 114.0 105 55.2
arahy.Tifrunner.gnm1.ann1.V13CJX Arachis hypogaea HOM05D001035 ORTHO05D001045 9.1e-24 113.6 97 57.7
Rhsim11G0054800 Rhododendron simsii HOM05D001035 ORTHO05D001045 9.1e-24 113.6 105 55.2
RcHm_v2.0_Chr7g0228111 Rosa chinensis HOM05D001035 ORTHO05D001045 1.2e-23 113.2 104 56.7
Duzib116G0807 Durio zibethinus HOM05D001035 ORTHO05D001045 2.0e-23 112.5 103 55.3
Glyma.08G238800 Glycine max HOM05D001035 ORTHO05D001045 2.0e-23 112.5 97 58.8
arahy.Tifrunner.gnm1.ann1.LX8XJC Arachis hypogaea HOM05D001035 ORTHO05D001045 2.7e-23 112.1 97 56.7
FAN08G1353 Fragaria x ananassa HOM05D001035 ORTHO05D001045 2.7e-23 112.1 104 55.8
Glyma.20G071666 Glycine max HOM05D001035 ORTHO05D001045 2.7e-23 112.1 97 55.7
FvH4_5g32060 Fragaria vesca HOM05D001035 ORTHO05D001045 3.5e-23 111.7 104 55.8
FAN18G0239 Fragaria x ananassa HOM05D001035 ORTHO05D001045 3.5e-23 111.7 104 55.8
Peaxi162Scf00391g00737 Petunia axillaris HOM05D001035 ORTHO05D001045 3.5e-23 111.7 104 53.8
Actinidia18883 Actinidia chinensis HOM05D001035 ORTHO05D001045 4.5e-23 111.3 105 53.3
Ca_19705_v3 Cicer arietinum L. HOM05D001035 ORTHO05D001045 4.5e-23 111.3 97 54.6
TAR381G0676 Trochodendron aralioides HOM05D001035 ORTHO05D001045 4.5e-23 111.3 103 54.4
Lalb_Chr01g0000111 Lupinus albus HOM05D001035 ORTHO05D001045 7.7e-23 110.5 97 56.7
Manes.02G196600 Manihot esculenta HOM05D001035 ORTHO05D001045 7.7e-23 110.5 104 54.8
Actinidia35139 Actinidia chinensis HOM05D001035 ORTHO05D001045 1.0e-22 110.2 105 53.3
Ciclev10000204m.g Citrus clementina HOM05D001035 ORTHO05D001045 1.0e-22 110.2 104 54.8
PGR042G2161 Punica granatum HOM05D001035 ORTHO05D001045 1.0e-22 110.2 104 54.8
Nitab4.5_0002013g0020 Nicotiana tabacum HOM05D001035 ORTHO05D001045 1.3e-22 109.8 104 52.9
Aqoxy5G03463 Aquilegia oxysepala HOM05D001035 ORTHO05D001045 1.7e-22 109.4 98 57.1
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 1.7e-22 109.4 104 47.1
Glyma.12G001200 Glycine max HOM05D001035 ORTHO05D001045 1.7e-22 109.4 97 55.7
Lj3g0009046 Lotus japonicus HOM05D001035 ORTHO05D001045 1.7e-22 109.4 97 54.6
VMungo1127G0841 Vigna mungo HOM05D001035 ORTHO05D001045 1.7e-22 109.4 97 54.6
Atru.chr13.2382 Acer truncatum HOM05D001035 ORTHO05D001045 2.2e-22 109.0 103 52.4
Cpa.g.sc66.12 Carica papaya HOM05D001035 ORTHO05D001045 2.2e-22 109.0 103 55.3
DCAR_011522 Daucus carota HOM05D001035 ORTHO05D001045 2.2e-22 109.0 104 52.9
Nitab4.5_0003211g0030 Nicotiana tabacum HOM05D001035 ORTHO05D001045 2.9e-22 108.6 104 52.9
Phvul.011G001200 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 2.9e-22 108.6 97 53.6
Sopen11g011250 Solanum pennellii HOM05D001035 ORTHO05D001045 2.9e-22 108.6 104 52.9
Nn3g18383 Nelumbo nucifera HOM05D001035 ORTHO05D001045 6.5e-22 107.5 104 52.9
Psat7g225680 Pisum sativum HOM05D001035 ORTHO05D001045 6.5e-22 107.5 97 54.6
Cc10_g10150 Coffea canephora HOM05D001035 ORTHO05D001045 8.5e-22 107.1 104 52.9
Medtr4g032925 Medicago truncatula HOM05D001035 ORTHO05D001045 8.5e-22 107.1 97 53.6
Medtr4g032935 Medicago truncatula HOM05D001035 ORTHO05D001045 8.5e-22 107.1 97 53.6
SGA_v2.0_scaffold118G32518 Striga asiatica HOM05D001035 ORTHO05D001045 2.5e-21 105.5 104 51.9
Migut.C01305 Erythranthe guttata HOM05D001035 ORTHO05D001045 3.2e-21 105.1 104 51.9
HanXRQChr02g0044241 Helianthus annuus HOM05D001035 ORTHO05D001045 3.2e-21 105.1 108 50.9
SGA_v2.0_scaffold118G32529 Striga asiatica HOM05D001035 ORTHO05D001045 3.2e-21 105.1 104 51.0
TPR.G34169 Trifolium pratense HOM05D001035 ORTHO05D001045 3.2e-21 105.1 97 54.6
Lsat_1_v5_gn_1_12260 Lactuca sativa HOM05D001035 ORTHO05D001045 4.2e-21 104.8 107 48.6
Lj3A34G36 Lonicera japonica HOM05D001035 ORTHO05D001045 4.2e-21 104.8 104 51.0
Oeu013894.4 Olea europaea HOM05D001035 ORTHO05D001045 7.2e-21 104.0 104 52.9
Sabra19G0091500 Salix brachista HOM05D001035 ORTHO05D001045 3.6e-20 101.7 97 54.6
Eucgr.F03001 Eucalyptus grandis HOM05D001035 ORTHO05D001045 4.7e-20 101.3 104 52.9
AUR62004617 Chenopodium quinoa HOM05D001035 ORTHO05D001045 6.1e-20 100.9 98 49.0
AUR62022644 Chenopodium quinoa HOM05D001035 ORTHO05D001045 6.1e-20 100.9 98 49.0
Potri.019G080300 Populus trichocarpa HOM05D001035 ORTHO05D001045 6.1e-20 100.9 104 52.9
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.4e-19 99.8 104 49.0
SalBow7G3463 Salvia bowleyana HOM05D001035 ORTHO05D001045 1.4e-19 99.8 104 49.0
Haze_21290 Corylus avellana HOM05D001035 ORTHO05D001045 1.8e-19 99.4 142 41.5
EL10Ac1g00120 Beta vulgaris HOM05D001035 ORTHO05D001045 6.8e-19 97.4 106 50.0
Hund27102 Selenicereus undatus HOM05D001035 ORTHO05D001045 1.2e-18 96.7 103 47.6
Solyc11g022380.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 1.2e-18 96.7 103 48.5
CsaV3_2G033000 Cucumis sativus L. HOM05D001035 ORTHO05D001045 1.5e-18 96.3 98 50.0
Sed0015270 Sechium edule HOM05D001035 ORTHO05D001045 1.5e-18 96.3 98 50.0
MELO3C008069.2 Cucumis melo HOM05D001035 ORTHO05D001045 2.0e-18 95.9 98 50.0
Sabra13G0093300 Salix brachista HOM05D001035 ORTHO05D001045 2.0e-18 95.9 104 49.0
CANSAT01G0217 Cannabis sativa HOM05D001035 ORTHO05D001045 5.7e-18 94.4 103 46.6
ATR0693G444 Amborella trichopoda HOM05D001035 ORTHO05D001045 1.3e-17 93.2 96 52.1
Potri.013G107950 Populus trichocarpa HOM05D001035 ORTHO05D001045 1.7e-17 92.8 105 49.5
PSO170G4043 Papaver somniferum HOM05D001035 ORTHO05D001045 6.3e-17 90.9 98 49.0
PSO017G4800 Papaver somniferum HOM05D001035 ORTHO05D001045 2.4e-16 89.0 98 48.0
SabraUnG0004200 Salix brachista HOM05D006426 ORTHO05D007737 5.4e-16 87.8 85 54.1
CDE02G2546 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 1.2e-15 86.7 106 44.3
MBI03_g13494_MAGBIO Magnolia biondii HOM05D001035 ORTHO05D001045 1.6e-15 86.3 104 45.2
Sc26g0000520 Simmondsia chinensis HOM05D001035 ORTHO05D001045 2.0e-15 85.9 97 45.4
Ah.05g178430 Amaranthus hybridus HOM05D001035 ORTHO05D001045 4.5e-15 84.7 102 43.1
Os08g0109100 Oryza sativa ssp. japonica HOM05D001035 ORTHO05D001045 5.9e-15 84.3 103 42.7
vmacro00749 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 6.5e-14 80.9 101 45.5
HPP92_001194 Vanilla planifolia HOM05D001035 ORTHO05D001045 8.5e-14 80.5 103 39.8
SEGI_16379 Sequoiadendron giganteum HOM05D001035 ORTHO05D001045 5.5e-13 77.8 104 45.2
AUR62041750 Chenopodium quinoa HOM05D003315 ORTHO05D003407 8.0e-12 73.9 100 38.0
Pp3c5_9070 Physcomitrium patens HOM05D001035 ORTHO05D001045 4.9e-09 64.7 104 40.4
unitig_32.g11184 Utricularia gibba HOM05D001035 ORTHO05D007098 4.9e-09 64.7 132 34.1
Pp3c15_2850 Physcomitrium patens HOM05D001035 ORTHO05D001045 5.4e-08 61.2 105 33.3
Cfa012766 Carpinus fangiana HOM05D001035 ORTHO05D001045 3.5e-07 58.5 61 52.5
ClCG11G008630 Citrullus lanatus HOM05D001035 ORTHO05D023228 1.7e-06 56.2 43 55.8
Pp3c15_20440 Physcomitrium patens HOM05D001035 ORTHO05D001045 5.0e-06 54.7 94 35.1


User provided reference genes

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