Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 3070.4 1555 100.0
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2908.2 1560 95.4
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2905.9 1565 95.3
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2900.2 1566 95.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2863.2 1561 94.3
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2856.2 1560 94.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2825.0 1606 90.1
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2775.7 1581 89.3
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2744.9 1577 89.2
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2733.4 1574 88.8
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2726.4 1578 88.8
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2721.0 1580 88.3
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2708.3 1593 87.2
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2705.6 1626 85.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2701.4 1601 86.3
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2699.1 1623 85.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2664.4 1618 84.7
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2582.7 1623 82.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2530.0 1601 80.6
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2511.9 1575 83.0
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2365.1 1575 75.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2346.6 1597 74.6
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2346.2 1611 74.3
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2339.7 1596 75.5
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1603 73.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2331.2 1607 74.2
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2330.1 1598 74.1
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2306.9 1610 72.8
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2299.6 1607 73.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2299.2 1615 72.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2291.5 1615 72.4
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2282.3 1607 71.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2281.1 1613 72.2
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2276.5 1622 71.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2274.2 1605 72.2
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2270.7 1626 71.6
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2268.0 1614 71.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2266.9 1613 71.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2262.6 1592 72.4
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2250.3 1615 71.5
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2249.2 1613 70.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2241.5 1613 70.4
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2240.3 1613 70.2
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2233.0 1608 70.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2227.6 1611 70.1
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2221.0 1582 71.6
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2218.0 1620 70.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2215.7 1635 68.7
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2194.9 1602 70.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2191.8 1605 69.3
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2190.2 1572 71.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2183.3 1604 70.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2182.9 1593 70.6
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2179.8 1628 69.2
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2179.8 1527 73.0
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1640 68.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2177.5 1609 69.9
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2174.8 1589 68.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2172.5 1603 69.8
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2170.2 1600 68.9
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2162.9 1597 68.8
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1620 68.5
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2149.4 1592 68.5
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2148.6 1518 72.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2144.8 1592 69.0
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2142.1 1598 69.3
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2137.8 1587 68.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1607 67.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2132.1 1617 66.9
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2132.1 1920 60.4
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2126.7 1613 66.5
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2119.7 1439 75.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2113.6 1588 67.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2113.6 1603 67.9
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2097.0 1654 65.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2092.0 1572 67.2
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2086.2 1610 65.8
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2074.3 1597 66.7
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2066.2 1418 73.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2050.4 1516 68.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1999.9 1596 64.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1993.4 1587 64.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1984.1 1521 66.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1965.7 1412 72.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1926.8 1950 54.0
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1909.0 1401 70.7
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1907.1 1597 61.9
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1899.0 1603 61.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1899.0 1473 66.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1898.2 1192 79.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1878.2 1530 62.7
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1853.2 1555 61.9
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1845.5 1624 60.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1657.9 1531 59.1
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1653.6 1094 75.7
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1615.9 1215 68.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1459.5 1365 58.4
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1458.0 979 74.0
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1430.2 975 73.4
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1427.9 1415 55.9
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1371.7 1608 47.6
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1317.8 1203 55.1
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1317.0 1616 46.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1302.0 1533 46.4
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1193.7 1073 57.7
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1117.4 738 75.7
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1087.8 1572 43.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.9e-271 940.3 520 93.1
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.1e-258 897.9 646 72.4
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.3e-235 821.2 599 70.3
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.4e-229 800.4 526 75.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 7.5e-223 778.9 661 62.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.9e-211 740.3 618 61.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-203 714.9 503 70.4
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.6e-199 700.7 579 63.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.8e-185 654.1 591 60.2
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.1e-185 652.5 598 59.7
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 6.9e-160 569.7 640 50.5
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.2e-159 568.9 552 55.8
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 5.3e-152 543.5 332 78.9
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 3.4e-151 540.8 555 54.4
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-149 535.4 517 57.1
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.2e-141 507.7 364 73.1
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 9.3e-141 506.1 329 79.6
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.1e-130 472.6 478 53.1
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.3e-129 469.2 485 50.5
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.9e-127 460.3 312 76.0
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 6.5e-126 456.8 512 50.4
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.5e-125 454.9 290 80.3
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 5.5e-125 453.8 416 59.9
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.3e-115 421.8 318 69.2
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.5e-110 403.7 405 53.1
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.1e-109 402.9 362 57.5
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.9e-109 402.1 314 67.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.0e-99 369.8 246 74.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.2e-89 335.5 435 45.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 4.0e-75 288.1 228 63.2
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.7e-70 272.7 216 65.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 5.4e-64 251.1 153 77.1
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 7.1e-64 250.8 150 80.0
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.2e-58 233.4 142 77.5
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.1e-51 210.3 142 65.5
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.4e-51 209.1 146 74.0
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 3.2e-48 198.7 121 81.8
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.4e-48 198.0 212 51.9
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.3e-44 186.8 129 76.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-35 154.8 143 61.5
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-35 154.8 143 61.5
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-35 154.8 143 61.5
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-35 154.8 143 61.5
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-35 154.8 143 61.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.9e-35 154.5 143 60.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.6e-34 152.5 143 60.8
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.5e-34 151.8 143 60.8
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.6e-31 143.3 91 75.8
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.9e-31 141.0 92 72.8
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.7e-30 137.9 137 53.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 8.7e-30 137.5 83 77.1
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 4.3e-29 135.2 92 66.3
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 4.1e-27 128.6 96 64.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.0e-27 127.5 130 57.7
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.6e-26 125.9 130 56.9
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.5e-24 119.4 76 68.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.2e-18 100.5 75 64.0
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.3e-17 97.1 103 55.3
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.1e-16 94.0 89 56.2
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 1.9e-16 93.2 89 55.1
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.4e-14 87.0 82 56.1
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.8e-14 86.7 49 73.5
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.4e-13 81.3 56 71.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 8.2e-12 77.8 54 68.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 5.9e-10 71.6 55 58.2
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.9e-08 66.6 54 61.1
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 4.7e-07 62.0 42 66.7
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.4e-06 60.5 43 67.4
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 6.7e-06 58.2 48 58.3


User provided reference genes

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