Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 6.0e-86 320.9 167 100.0
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 4.9e-80 301.2 167 94.6
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 6.4e-80 300.8 167 95.2
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 1.4e-79 299.7 167 94.6
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 3.4e-65 251.9 157 85.4
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-62 243.0 164 79.3
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 1.6e-62 243.0 164 79.3
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 2.1e-62 242.7 164 79.3
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 6.0e-62 241.1 164 78.7
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 6.0e-62 241.1 164 78.7
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.0e-61 240.4 165 77.0
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.0e-61 240.4 154 81.8
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 3.0e-61 238.8 160 82.5
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 8.7e-61 237.3 160 78.1
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 5.6e-60 234.6 157 76.4
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.1e-58 230.3 155 77.4
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 8.7e-53 210.7 170 70.6
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 8.7e-53 210.7 170 70.6
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 8.7e-53 210.7 170 70.6
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.4e-50 203.4 161 66.5
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 4.0e-50 201.8 161 68.9
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 2.5e-47 192.6 107 93.5
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 2.1e-46 189.5 107 92.5
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 4.5e-41 171.8 167 56.3
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 5.9e-41 171.4 167 56.3
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.7e-40 169.9 167 56.3
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 6.5e-40 167.9 136 69.1
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 8.5e-40 167.5 136 69.1
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.1e-39 167.2 166 54.2
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 5.5e-39 164.9 166 53.0
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 5.5e-39 164.9 166 53.0
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 5.5e-39 164.9 166 53.0
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 9.3e-39 164.1 155 55.5
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 1.2e-38 163.7 166 53.0
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.6e-38 163.3 168 53.6
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 2.7e-38 162.5 166 52.4
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.5e-31 139.4 160 46.9
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.0e-28 129.8 144 50.0
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 5.0e-24 115.2 154 42.2
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 3.9e-21 105.5 120 50.0
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 7.0e-18 94.7 131 40.5
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.2e-17 94.0 156 34.0
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.6e-17 93.6 132 37.1
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 5.9e-17 91.7 154 33.8
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.9e-16 89.4 130 40.0
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.8e-16 89.0 130 39.2
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 8.5e-16 87.8 130 39.2
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.9e-15 86.7 159 35.8
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.9e-15 86.7 159 35.8
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.9e-15 86.7 159 34.0
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.2e-14 84.0 162 35.8
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.7e-14 82.0 137 37.2
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 6.1e-14 81.6 159 32.7
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 1.0e-13 80.9 159 35.2
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 1.0e-13 80.9 159 35.2
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 1.0e-13 80.9 159 35.2
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 1.0e-13 80.9 131 35.9
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.0e-13 80.9 140 37.9
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 1.4e-13 80.5 159 34.6
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 1.4e-13 80.5 153 34.0
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 2.3e-13 79.7 159 34.6
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 3.0e-13 79.3 159 32.1
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 3.0e-13 79.3 148 35.1
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 6.7e-13 78.2 129 35.7
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 6.7e-13 78.2 155 32.9
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 8.8e-13 77.8 162 34.6
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.2e-12 77.4 143 35.0
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 1.5e-12 77.0 158 31.6
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.0e-12 76.6 131 35.9
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.0e-12 76.6 131 32.8
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 2.6e-12 76.3 157 31.8
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 4.4e-12 75.5 160 31.9
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 4.4e-12 75.5 143 32.9
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 4.4e-12 75.5 158 31.6
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 4.4e-12 75.5 158 31.6
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 5.7e-12 75.1 143 33.6
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 5.7e-12 75.1 140 36.4
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 7.5e-12 74.7 149 33.6
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 9.7e-12 74.3 140 32.9
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 1.3e-11 73.9 159 30.8
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.7e-11 73.6 158 31.0
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 1.7e-11 73.6 159 30.8
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.7e-11 73.6 158 31.0
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.7e-11 73.6 159 30.8
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 2.8e-11 72.8 174 31.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 3.7e-11 72.4 138 33.3
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 3.7e-11 72.4 163 31.9
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 4.8e-11 72.0 158 35.4
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 4.8e-11 72.0 163 31.9
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 6.3e-11 71.6 159 33.3
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 8.2e-11 71.2 163 29.4
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.1e-10 70.9 162 30.9
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.1e-10 70.9 154 35.1
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.4e-10 70.5 142 32.4
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.8e-10 70.1 163 30.1
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 1.8e-10 70.1 159 30.2
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 1.8e-10 70.1 159 30.2
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 2.4e-10 69.7 143 31.5
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 3.1e-10 69.3 142 33.1
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 3.1e-10 69.3 147 30.6
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 4.1e-10 68.9 130 33.8
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 5.3e-10 68.6 121 32.2
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 9.1e-10 67.8 163 29.4
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 1.2e-09 67.4 159 30.8
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.6e-09 67.0 141 30.5
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.6e-09 67.0 134 31.3
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 2.7e-09 66.2 158 33.5
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 5.9e-09 65.1 138 31.9
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 5.9e-09 65.1 153 30.1
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 5.9e-09 65.1 127 33.1
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 7.7e-09 64.7 159 34.0
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 7.7e-09 64.7 152 29.6
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 7.7e-09 64.7 164 28.7
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 1.0e-08 64.3 122 32.8
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 2.9e-08 62.8 146 30.1
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 6.5e-08 61.6 150 26.7
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 6.5e-08 61.6 150 26.7
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 6.5e-08 61.6 153 29.4
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 8.5e-08 61.2 141 30.5
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.1e-07 60.8 165 26.7
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 1.1e-07 60.8 154 26.6
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 1.5e-07 60.5 158 29.7
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.5e-07 60.5 158 29.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.9e-07 60.1 151 28.5
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.9e-07 60.1 152 26.3
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 2.5e-07 59.7 159 26.4
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 3.2e-07 59.3 159 25.8
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 3.2e-07 59.3 150 30.7
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 3.2e-07 59.3 150 30.7
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 4.2e-07 58.9 147 25.9
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 4.2e-07 58.9 147 25.9
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 4.2e-07 58.9 141 27.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 7.2e-07 58.2 141 28.4
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 7.2e-07 58.2 150 28.7
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 9.4e-07 57.8 158 25.9
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 9.4e-07 57.8 143 33.6
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 1.2e-06 57.4 165 26.7
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.6e-06 57.0 148 27.0
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 1.6e-06 57.0 151 29.1
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 2.1e-06 56.6 146 27.4
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 2.1e-06 56.6 139 28.8
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 2.7e-06 56.2 146 27.4
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 3.6e-06 55.8 171 29.8
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 4.7e-06 55.5 180 27.2
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 8.0e-06 54.7 146 28.1


User provided reference genes

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