Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 1.0e-178 630.2 363 100.0
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.9e-153 546.2 367 86.6
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 3.2e-153 545.4 367 86.9
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 2.1e-152 542.7 367 86.4
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 2.6e-150 535.8 368 85.9
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 1.1e-145 520.4 368 83.7
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 2.5e-121 439.5 367 67.3
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 4.1e-116 422.2 367 73.6
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 7.1e-116 421.4 311 80.1
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 3.8e-101 372.5 368 61.1
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 2.4e-100 369.8 360 60.6
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 6.0e-99 365.2 358 59.8
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 3.9e-98 362.5 366 58.7
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 8.7e-98 361.3 364 57.7
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 1.5e-97 360.5 369 59.1
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 4.0e-95 352.4 372 58.3
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 3.8e-93 345.9 366 57.4
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 1.2e-91 340.9 362 56.9
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 5.8e-86 322.0 216 78.2
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.1e-83 313.5 377 53.1
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 8.2e-80 301.6 376 49.5
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.2e-77 293.5 359 51.5
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.9e-76 290.4 373 48.0
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 4.6e-75 285.8 375 48.0
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 6.0e-75 285.4 374 48.4
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 2.2e-72 276.9 364 48.4
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 1.1e-71 274.6 362 48.1
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 4.5e-62 242.7 368 44.6
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 7.7e-62 241.9 365 44.7
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.8e-58 230.7 212 62.3
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 1.1e-49 201.4 308 43.5
BolC7t42543H Brassica oleracea HOM05D003615 ORTHO05D004858 8.0e-43 178.7 104 81.7
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 1.1e-31 141.7 352 32.1
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 1.2e-30 138.3 88 71.6
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 7.7e-30 135.6 346 31.8
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 1.0e-29 135.2 348 31.0
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.9e-29 133.7 352 30.7
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 8.6e-29 132.1 181 47.5
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 1.1e-28 131.7 359 31.2
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 1.9e-28 131.0 364 30.2
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 2.5e-28 130.6 351 30.2
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 4.2e-28 129.8 181 47.0
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.2e-28 129.8 356 30.9
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 5.5e-28 129.4 356 28.9
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 1.2e-27 128.3 358 29.9
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.4e-26 124.8 357 29.7
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.3e-26 124.0 356 30.3
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.0e-26 123.2 356 28.9
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 2.6e-25 120.6 356 29.2
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.4e-25 120.2 356 27.8
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.4e-25 119.8 354 28.0
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 1.3e-24 118.2 356 28.9
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.7e-24 117.9 359 29.8
BcaC05g26284 Brassica carinata HOM05D003615 ORTHO05D004858 3.7e-24 116.7 117 55.6
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 3.7e-24 116.7 357 28.3
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 1.8e-23 114.4 352 29.8
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.2e-22 111.7 352 29.8
BolC5t31003H Brassica oleracea HOM05D003615 ORTHO05D004858 1.6e-22 111.3 169 49.7
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.6e-22 111.3 361 28.5
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 2.0e-22 110.9 359 28.1
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.8e-22 109.0 359 29.0
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 7.8e-22 109.0 357 28.0
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 1.0e-21 108.6 348 30.2
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.0e-21 108.6 360 26.4
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 1.0e-21 108.6 341 30.8
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 2.3e-21 107.5 248 31.9
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.3e-21 107.5 356 28.9
BcaC05g26285 Brassica carinata HOM05D003615 ORTHO05D004858 5.0e-21 106.3 187 44.9
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 6.6e-21 105.9 361 29.6
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.1e-20 105.1 374 28.1
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.5e-20 104.8 350 27.4
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-20 104.8 357 28.9
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 1.5e-20 104.8 363 27.3
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 1.9e-20 104.4 352 27.6
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 2.5e-20 104.0 354 30.2
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 3.3e-20 103.6 239 32.2
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.3e-20 103.6 356 28.9
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 3.3e-20 103.6 359 27.3
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 4.3e-20 103.2 365 27.7
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 4.3e-20 103.2 355 33.2
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 4.3e-20 103.2 360 29.7
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 5.6e-20 102.8 356 28.4
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 5.6e-20 102.8 356 27.8
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 5.6e-20 102.8 355 30.4
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 1.2e-19 101.7 356 28.4
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 1.2e-19 101.7 353 28.9
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.2e-19 101.7 359 27.6
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 1.6e-19 101.3 378 29.6
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.1e-19 100.9 353 26.9
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 2.1e-19 100.9 357 26.9
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.6e-19 100.1 248 32.3
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 6.1e-19 99.4 358 28.2
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 8.0e-19 99.0 355 32.7
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.0e-18 98.6 260 31.9
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 1.4e-18 98.2 356 26.4
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-18 97.8 356 28.7
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 5.2e-18 96.3 354 28.0
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 5.2e-18 96.3 357 26.9
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 6.8e-18 95.9 260 30.4
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 8.9e-18 95.5 315 29.5
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.2e-17 95.1 360 29.7
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 1.5e-17 94.7 356 26.7
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.6e-17 94.0 362 28.7
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 2.6e-17 94.0 298 27.2
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 2.6e-17 94.0 353 26.9
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 3.4e-17 93.6 353 29.2
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 5.8e-17 92.8 129 36.4
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 5.8e-17 92.8 357 28.0
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 7.5e-17 92.4 253 30.8
BcaC05g26286 Brassica carinata HOM05D003615 ORTHO05D004858 9.8e-17 92.0 242 42.1
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 9.8e-17 92.0 257 30.0
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.2e-16 90.9 136 36.0
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 2.2e-16 90.9 124 37.9
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 2.9e-16 90.5 363 28.7
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 2.9e-16 90.5 360 26.9
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-16 90.1 357 27.7
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.9e-16 89.7 226 31.4
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.9e-16 89.7 357 28.3
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 4.9e-16 89.7 356 26.4
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 4.9e-16 89.7 356 27.8
BolC5t31002H Brassica oleracea HOM05D003615 ORTHO05D004858 6.4e-16 89.4 255 40.8
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.1e-15 88.6 345 30.7
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-15 88.6 353 29.7
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.4e-15 88.2 342 29.8
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 4.1e-15 86.7 354 26.8
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.1e-15 86.7 357 29.1
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 4.1e-15 86.7 352 27.6
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.2e-15 85.5 198 30.8
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 1.6e-14 84.7 103 41.7
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 4.6e-14 83.2 351 25.1
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 6.0e-14 82.8 364 26.1
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 1.7e-13 81.3 249 29.3
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.9e-13 80.1 354 25.1
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 6.6e-13 79.3 360 29.2
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 8.6e-13 79.0 357 25.8
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 8.6e-13 79.0 253 27.7
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.5e-12 78.2 228 28.1
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.9e-12 77.8 133 33.8
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 5.6e-12 76.3 256 28.5
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 5.6e-12 76.3 246 30.5
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 9.5e-12 75.5 220 31.8
C05p23030 Brassica napus HOM05D003615 ORTHO05D004858 1.6e-11 74.7 107 46.7
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.8e-11 73.9 355 26.2
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 3.6e-11 73.6 115 36.5
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.8e-10 71.2 205 31.7
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.3e-10 70.9 353 27.2
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 6.8e-10 69.3 352 25.3
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 8.9e-10 68.9 355 25.9
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 3.4e-09 67.0 355 22.3
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 5.8e-09 66.2 358 25.4
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 7.5e-09 65.9 353 26.9
FAN07G1344 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.3e-08 65.1 109 40.4
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.7e-08 64.7 141 29.8
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.7e-08 64.7 353 25.8
FAN17G2861 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.9e-08 63.9 109 39.4
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 3.7e-08 63.5 250 26.8
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 3.7e-08 63.5 225 28.0
FvH4_4g34760 Fragaria vesca HOM05D003615 ORTHO05D015110 4.9e-08 63.2 109 38.5
FAN12G4087 Fragaria x ananassa HOM05D003615 ORTHO05D015110 4.9e-08 63.2 109 38.5
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 4.9e-08 63.2 114 40.4
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.1e-07 60.1 354 24.9
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 4.1e-07 60.1 100 32.0
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.0e-07 59.3 361 27.1
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 7.0e-07 59.3 119 31.9
FAN17G2106 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.2e-06 58.5 225 28.9
FAN07G0013 Fragaria x ananassa HOM05D003615 ORTHO05D015110 3.5e-06 57.0 109 37.6


User provided reference genes

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