Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 1.1e-154 550.1 303 100.0
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 1.1e-90 337.4 384 59.9
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 3.4e-87 325.9 375 61.1
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 2.7e-84 316.2 353 58.1
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 2.7e-84 316.2 353 58.1
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.0e-83 314.3 350 58.9
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 6.6e-83 311.6 373 58.2
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 1.5e-82 310.5 372 58.1
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 6.2e-81 305.1 377 56.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 6.2e-81 305.1 363 58.7
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 2.0e-79 300.1 363 58.1
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 3.5e-76 289.3 387 55.0
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.3e-75 287.3 381 58.3
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 2.2e-70 270.0 402 50.0
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 1.7e-67 260.4 405 50.4
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 8.9e-64 248.1 407 47.2
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 2.6e-63 246.5 193 73.6
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 2.9e-54 216.5 402 46.8
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 8.1e-41 171.8 376 38.6
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 8.1e-41 171.8 364 38.2
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 4.0e-40 169.5 388 37.6
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 8.4e-38 161.8 413 36.3
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 7.9e-36 155.2 418 34.9
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.3e-35 154.5 376 36.4
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.3e-35 153.7 364 36.3
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 6.7e-35 152.1 391 34.5
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.9e-34 150.6 374 37.2
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.5e-34 150.2 367 36.2
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.3e-34 149.4 371 35.6
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 4.3e-34 149.4 379 35.6
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 5.6e-34 149.1 382 36.6
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 5.6e-34 149.1 409 33.3
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 7.4e-34 148.7 373 35.1
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 2.1e-33 147.1 378 35.7
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.8e-33 146.7 385 35.3
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 3.7e-33 146.4 387 35.7
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 3.7e-33 146.4 373 36.5
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 4.8e-33 146.0 361 34.3
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 4.8e-33 146.0 377 35.5
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 3.1e-32 143.3 374 36.1
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.5e-31 141.0 409 35.7
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 2.0e-31 140.6 397 33.5
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 2.0e-31 140.6 429 32.2
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 3.4e-31 139.8 397 33.2
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 4.5e-31 139.4 407 34.2
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.5e-31 139.4 393 34.6
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 4.5e-31 139.4 393 34.6
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 4.5e-31 139.4 383 34.7
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 5.8e-31 139.0 373 36.7
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 7.6e-31 138.7 394 33.8
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 7.6e-31 138.7 384 32.3
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.0e-30 138.3 384 32.8
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 2.2e-30 137.1 376 33.8
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 2.9e-30 136.7 372 34.1
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 3.8e-30 136.3 365 35.3
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.1e-29 134.8 378 33.3
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.9e-29 134.0 352 36.4
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 1.9e-29 134.0 400 34.2
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 1.9e-29 134.0 363 35.3
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.9e-29 134.0 386 33.9
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 3.2e-29 133.3 387 34.1
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 5.5e-29 132.5 235 38.7
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 5.5e-29 132.5 237 40.9
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 7.1e-29 132.1 401 33.2
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 9.3e-29 131.7 374 33.7
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 1.2e-28 131.3 226 40.3
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 2.1e-28 130.6 358 36.0
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.7e-28 130.2 389 34.4
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 2.7e-28 130.2 391 34.3
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 2.7e-28 130.2 371 33.7
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 2.7e-28 130.2 380 35.0
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 3.5e-28 129.8 260 38.5
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 7.9e-28 128.6 351 32.8
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 1.0e-27 128.3 373 33.8
BcaC02g11860 Brassica carinata HOM05D021391 ORTHO05D016766 1.3e-27 127.9 137 65.0
BcaC02g11861 Brassica carinata HOM05D021391 ORTHO05D016766 1.3e-27 127.9 137 65.0
C04p10490 Brassica napus HOM05D021391 ORTHO05D016766 1.3e-27 127.9 137 65.0
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.3e-27 127.9 409 35.9
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.3e-27 127.1 367 32.7
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 3.0e-27 126.7 392 32.9
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 3.9e-27 126.3 382 33.5
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 3.9e-27 126.3 332 35.8
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 3.9e-27 126.3 351 34.5
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 5.1e-27 125.9 389 32.1
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.1e-26 124.8 367 34.6
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.5e-26 124.4 345 31.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 3.3e-26 123.2 381 33.9
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 4.3e-26 122.9 237 38.8
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 4.3e-26 122.9 384 32.3
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 5.7e-26 122.5 452 29.4
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 5.7e-26 122.5 381 33.9
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.3e-25 121.3 337 35.0
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 1.3e-25 121.3 374 32.6
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 2.2e-25 120.6 368 32.1
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 2.2e-25 120.6 243 35.4
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.8e-25 120.2 337 34.7
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 2.8e-25 120.2 383 32.6
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.7e-25 119.8 337 34.7
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 3.7e-25 119.8 408 31.6
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 3.7e-25 119.8 381 33.6
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 4.8e-25 119.4 382 35.1
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 1.1e-24 118.2 381 33.3
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 4.1e-24 116.3 361 31.0
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 5.3e-24 115.9 342 33.6
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 5.3e-24 115.9 377 31.6
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 6.9e-24 115.5 408 31.4
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 1.5e-23 114.4 366 31.7
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.0e-23 114.0 374 35.6
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 4.5e-23 112.8 77 75.3
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 4.5e-23 112.8 77 75.3
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.5e-23 112.8 234 35.5
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 4.5e-23 112.8 239 36.8
BcaC04g23617 Brassica carinata HOM05D021391 ORTHO05D016766 5.9e-23 112.5 138 65.9
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.9e-23 112.5 421 32.1
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 5.9e-23 112.5 364 29.9
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 5.9e-23 112.5 237 33.8
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 5.9e-23 112.5 379 31.1
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 2.2e-22 110.5 331 31.7
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.2e-22 110.5 419 32.0
A07p04350 Brassica napus HOM05D021391 ORTHO05D016766 2.9e-22 110.2 137 56.9
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.0e-22 109.4 374 32.9
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 8.5e-22 108.6 420 31.0
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 8.5e-22 108.6 363 33.1
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.9e-21 107.5 234 36.3
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 4.2e-21 106.3 402 32.6
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.5e-21 105.9 384 35.4
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 3.6e-20 103.2 104 67.3
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 4.6e-20 102.8 377 30.8
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.4e-19 101.3 307 33.9
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 1.4e-19 101.3 341 31.1
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 1.5e-18 97.8 428 31.1
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 1.5e-18 97.8 341 30.8
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.5e-18 97.8 374 31.8
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.5e-18 97.8 324 31.5
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 1.9e-18 97.4 369 32.0
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.5e-18 97.1 363 33.1
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 3.3e-18 96.7 392 31.4
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 9.7e-18 95.1 347 34.6
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 1.7e-17 94.4 410 28.8
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 2.2e-17 94.0 222 35.6
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 1.1e-16 91.7 361 29.1
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 6.9e-16 89.0 229 35.4
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 6.9e-16 89.0 383 31.3
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 1.2e-15 88.2 200 33.5
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.0e-15 87.4 381 29.7
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 2.6e-15 87.0 381 28.6
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 5.9e-15 85.9 235 31.5
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 1.0e-14 85.1 353 29.2
TAR622G0335 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.0e-14 85.1 202 36.6
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 2.9e-14 83.6 401 29.2
BcaC03g15848 Brassica carinata HOM05D007458 ORTHO05D009533 8.5e-14 82.0 63 69.8
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 8.5e-14 82.0 246 33.3
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.1e-13 81.6 196 33.7
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 5.5e-13 79.3 71 57.7
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 5.5e-13 79.3 349 27.5
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 7.2e-13 79.0 377 32.6
A07p13300 Brassica napus HOM05D003373 ORTHO05D041218 6.1e-12 75.9 86 53.5
BraA07t29101Z Brassica rapa HOM05D003373 ORTHO05D041218 6.1e-12 75.9 86 53.5
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 7.9e-12 75.5 71 56.3
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 2.3e-11 73.9 101 47.5
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 3.9e-11 73.2 193 31.1
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 6.7e-11 72.4 100 44.0
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 8.8e-11 72.0 208 28.8
Prupe.1G265800 Prunus persica HOM05D003373 ORTHO05D004419 8.8e-11 72.0 207 38.6
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 3.3e-10 70.1 90 51.1
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.7e-09 66.6 108 39.8
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.7e-09 66.6 108 39.8
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 8.2e-09 65.5 89 48.3
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.4e-08 64.7 108 39.8
BolC9t53565H Brassica oleracea HOM05D021391 ORTHO05D016766 1.2e-07 61.6 56 66.1
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 2.0e-07 60.8 158 31.6
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 4.5e-07 59.7 303 25.4
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 1.0e-06 58.5 216 25.9
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 1.7e-06 57.8 133 33.1
Medtr5g037970 Medicago truncatula HOM05D003373 ORTHO05D004419 2.9e-06 57.0 121 34.7


User provided reference genes

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