Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 2.8e-109 398.7 207 100.0
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 6.9e-92 340.9 207 89.4
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 3.4e-91 338.6 207 88.9
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 3.4e-91 338.6 207 88.9
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 1.9e-81 306.2 211 80.1
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 5.7e-78 294.7 207 82.1
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 8.2e-77 290.8 207 81.6
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 8.5e-74 280.8 211 76.8
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 3.6e-72 275.4 211 75.4
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 8.8e-71 270.8 214 72.4
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 1.3e-66 256.9 221 69.7
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 1.9e-65 253.1 209 72.7
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 3.6e-64 248.8 210 69.5
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 1.7e-58 229.9 209 64.1
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 4.0e-55 218.8 214 61.2
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 1.4e-52 210.3 210 58.1
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 2.4e-52 209.5 208 61.1
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 1.6e-51 206.8 209 57.9
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.7e-50 203.4 207 58.5
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.1e-49 200.7 207 58.0
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 2.5e-49 199.5 207 56.5
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 7.2e-49 198.0 212 55.7
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 2.8e-48 196.1 212 56.1
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 5.2e-47 191.8 207 56.0
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 8.9e-47 191.0 208 55.8
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 8.9e-47 191.0 213 55.4
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 4.4e-46 188.7 213 55.4
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 7.5e-46 188.0 213 54.5
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 4.9e-45 185.3 210 55.7
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 8.3e-45 184.5 207 52.7
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.1e-44 184.1 207 53.1
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 1.8e-44 183.3 207 55.1
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 9.2e-44 181.0 208 55.3
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 2.7e-43 179.5 207 55.6
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 3.5e-43 179.1 210 53.8
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 1.3e-42 177.2 207 53.1
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 3.8e-42 175.6 207 51.7
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 8.6e-42 174.5 194 53.6
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 8.6e-42 174.5 212 53.3
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 1.5e-41 173.7 238 48.3
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 1.5e-41 173.7 208 52.9
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 1.9e-41 173.3 215 51.6
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 3.3e-41 172.6 207 52.7
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 4.3e-41 172.2 212 51.9
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 4.3e-41 172.2 216 54.2
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 7.3e-41 171.4 211 48.8
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 9.5e-41 171.0 207 53.1
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 1.6e-40 170.2 210 53.8
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 2.1e-40 169.9 210 54.8
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 8.0e-40 167.9 194 50.5
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.0e-39 167.5 213 52.1
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 6.8e-39 164.9 207 51.2
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 6.8e-39 164.9 210 52.9
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 3.4e-38 162.5 207 51.2
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 9.8e-38 161.0 211 49.3
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 9.8e-38 161.0 180 51.7
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 2.9e-37 159.5 130 73.1
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 2.9e-37 159.5 211 48.3
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 6.4e-37 158.3 208 51.4
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 8.3e-37 157.9 209 48.3
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.1e-36 157.5 211 49.3
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 1.1e-36 157.5 209 47.4
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.9e-36 156.8 163 54.0
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 2.4e-36 156.4 152 57.2
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 2.4e-36 156.4 157 55.4
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 9.2e-36 154.5 207 48.8
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 4.6e-35 152.1 219 45.2
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 4.6e-35 152.1 208 48.6
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 7.8e-35 151.4 222 43.7
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 3.0e-34 149.4 211 44.1
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 1.1e-33 147.5 211 43.6
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 1.1e-33 147.5 211 43.6
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 1.5e-33 147.1 153 56.2
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.9e-33 146.7 209 49.3
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 7.3e-33 144.8 152 53.3
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 9.5e-33 144.4 236 38.6
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 9.5e-33 144.4 210 44.3
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 1.6e-32 143.7 214 41.6
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 1.1e-31 141.0 219 40.6
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 3.1e-31 139.4 168 51.2
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 7.5e-30 134.8 212 44.3
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 7.5e-30 134.8 214 42.5
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 8.3e-29 131.3 221 43.9
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 1.1e-28 131.0 218 41.7
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 1.1e-28 131.0 218 43.6
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 1.9e-28 130.2 220 39.5
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 7.0e-28 128.3 154 48.1
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 2.1e-27 126.7 225 38.7
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 2.1e-27 126.7 261 37.5
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 3.5e-27 125.9 229 36.2
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 1.5e-25 120.6 225 38.2
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 5.6e-25 118.6 205 40.5
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 1.4e-23 114.0 118 54.2
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 1.2e-22 110.9 148 45.9
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 2.6e-22 109.8 211 39.8
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 4.4e-22 109.0 214 38.8
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 5.8e-22 108.6 159 44.7
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 6.4e-21 105.1 137 47.4
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 4.1e-20 102.4 143 44.1
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 1.2e-19 100.9 212 35.4
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 1.6e-11 73.9 96 47.9
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 3.1e-07 59.7 91 41.8


User provided reference genes

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