Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-198 694.5 338 100.0
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-169 599.0 304 94.7
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.1e-169 597.8 304 94.7
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-169 597.8 304 94.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.2e-162 576.6 304 90.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-162 575.9 304 92.4
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-144 516.2 286 85.3
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.5e-139 498.0 304 76.3
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.7e-138 495.7 304 76.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.7e-138 495.0 304 75.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.8e-137 493.0 304 74.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.3e-135 486.9 311 73.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-135 486.5 304 76.0
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-135 485.0 310 73.2
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.4e-134 482.6 304 74.0
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 7.0e-134 481.1 310 72.6
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 3.8e-132 475.3 304 73.0
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.8e-132 475.3 303 72.9
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 6.5e-132 474.6 304 73.4
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 8.5e-132 474.2 304 73.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.5e-131 472.6 306 72.9
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.1e-130 469.5 304 73.0
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.7e-130 468.4 304 73.4
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 6.8e-129 464.5 304 71.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 5.7e-128 461.5 304 70.4
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-127 460.3 304 70.7
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-126 456.8 292 72.9
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.8e-126 456.4 304 70.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 4.1e-126 455.3 307 70.4
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-125 453.8 304 70.1
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-122 443.7 291 70.4
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-122 443.7 304 69.4
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.0e-121 440.7 306 69.3
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-120 437.2 305 68.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-120 437.2 305 68.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 6.4e-119 431.4 306 67.3
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-117 426.8 243 87.2
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-116 424.1 306 66.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.0e-116 421.8 295 66.4
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 4.4e-112 408.7 305 65.9
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-111 407.1 291 67.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-111 406.8 304 65.1
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 5.4e-110 401.7 284 67.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-109 400.6 306 63.7
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.4e-96 355.9 214 77.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.4e-96 355.9 214 77.6
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-95 351.3 353 52.1
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.7e-90 335.5 300 52.7
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.8e-89 333.6 308 52.3
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 2.4e-89 333.2 308 52.3
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 3.1e-89 332.8 307 52.1
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.1e-89 332.8 304 53.0
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 4.0e-89 332.4 307 51.8
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 6.9e-89 331.6 297 53.9
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.2e-88 330.9 297 52.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.0e-88 330.1 297 53.2
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 3.4e-88 329.3 307 52.1
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.4e-88 328.9 297 52.9
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.8e-88 328.6 297 52.9
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.8e-88 328.6 302 51.0
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 7.6e-88 328.2 297 52.9
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 2.9e-87 326.2 297 53.2
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.9e-87 326.2 301 52.5
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.4e-87 325.1 311 50.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 8.4e-87 324.7 297 51.2
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 8.4e-87 324.7 302 52.0
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 8.4e-87 324.7 307 51.5
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.1e-86 324.3 304 51.3
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.4e-86 323.9 305 50.2
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.4e-86 323.9 297 51.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.4e-86 323.2 302 50.7
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.4e-86 323.2 306 51.0
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.2e-86 322.4 304 51.0
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 5.4e-86 322.0 305 51.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 7.1e-86 321.6 305 51.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.2e-85 320.9 302 51.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.1e-85 320.1 311 49.8
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.1e-85 320.1 303 51.2
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.5e-85 319.3 309 49.5
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.5e-85 319.3 304 51.0
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 3.5e-85 319.3 297 51.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 3.5e-85 319.3 307 50.2
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 7.8e-85 318.2 302 50.7
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.0e-84 317.8 300 50.3
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.3e-84 317.4 296 52.0
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.3e-84 317.4 302 51.3
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-84 317.4 297 50.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.3e-84 317.4 297 51.2
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.3e-84 317.4 302 51.3
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.7e-84 317.0 297 51.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.7e-84 317.0 316 50.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.7e-84 317.0 302 51.0
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.7e-84 317.0 305 49.2
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.3e-84 316.6 283 51.9
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.0e-84 316.2 311 49.5
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.0e-84 316.2 311 50.5
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 3.0e-84 316.2 306 48.7
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.0e-84 316.2 301 51.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 3.0e-84 316.2 305 52.5
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 5.1e-84 315.5 304 49.7
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 6.6e-84 315.1 313 50.2
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.7e-84 314.7 218 67.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.1e-83 314.3 304 50.0
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.5e-83 313.9 307 49.5
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 2.5e-83 313.2 313 50.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.3e-83 312.8 300 52.3
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 4.3e-83 312.4 297 49.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 4.3e-83 312.4 305 49.8
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.3e-83 311.6 291 51.5
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-82 309.7 293 51.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.8e-82 309.7 296 50.7
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.8e-82 309.7 302 49.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.6e-82 309.3 297 50.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.6e-82 309.3 313 49.2
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 4.8e-82 308.9 300 51.0
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.8e-82 308.9 308 50.3
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 8.1e-82 308.1 296 51.0
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 8.1e-82 308.1 296 51.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 8.1e-82 308.1 306 50.0
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.1e-82 308.1 304 50.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.4e-81 307.4 281 53.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.4e-81 306.6 303 49.2
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.1e-81 306.2 292 51.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.4e-80 302.8 303 49.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-79 300.1 311 48.9
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.4e-79 298.5 307 48.9
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 6.4e-79 298.5 305 47.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.4e-79 298.1 297 48.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 8.4e-79 298.1 317 46.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 2.4e-78 296.6 296 49.0
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.4e-78 296.6 308 49.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.2e-78 296.2 307 48.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.7e-77 293.1 293 46.8
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 3.5e-77 292.7 307 46.6
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.8e-76 290.4 310 46.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.1e-76 288.9 304 54.6
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 6.7e-76 288.5 369 42.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-75 285.8 273 50.5
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.9e-71 273.1 302 45.4
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-71 272.3 278 47.5
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 4.9e-71 272.3 278 47.5
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 8.4e-71 271.6 292 46.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 2.4e-70 270.0 287 47.7
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.7e-68 261.9 248 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 7.4e-67 258.5 281 44.8
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.7e-66 256.1 292 44.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.0e-65 252.7 302 43.4
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-60 237.7 150 72.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.8e-60 237.3 225 50.2
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.5e-59 234.2 228 49.6
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-59 231.9 162 71.6
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.1e-57 228.0 218 48.2
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.4e-57 227.6 225 49.3
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-46 191.4 128 68.8
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 6.7e-44 182.2 128 65.6
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 6.7e-44 182.2 128 65.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 5.7e-43 179.1 173 50.9
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-38 163.7 107 68.2
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.4e-36 157.9 332 32.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.0e-36 156.8 209 39.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 6.3e-34 149.1 293 32.1
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 6.5e-31 139.0 180 41.7
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 3.2e-30 136.7 192 41.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.3e-18 95.9 79 55.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.4e-12 78.2 72 47.2
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 9.8e-11 72.0 283 23.7
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-09 67.8 74 44.6


User provided reference genes

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