Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 1.2e-101 373.2 193 100.0
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 2.4e-78 295.8 161 95.7
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.7e-76 289.7 157 96.2
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 4.2e-75 285.0 154 96.1
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.0e-73 280.4 154 94.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.0e-73 278.9 150 96.7
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.1e-72 276.9 151 96.0
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 2.0e-69 266.2 154 90.3
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 7.2e-67 257.7 153 88.2
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 7.4e-64 247.7 153 84.3
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 7.4e-64 247.7 153 86.3
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 1.3e-63 246.9 149 87.2
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 4.8e-63 245.0 153 85.6
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 2.3e-57 226.1 149 79.2
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 3.4e-40 169.1 145 60.0
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 3.4e-40 169.1 149 59.7
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 4.4e-40 168.7 145 60.0
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 5.7e-40 168.3 145 59.3
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.3e-39 167.2 145 59.3
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.3e-39 167.2 143 61.5
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 1.7e-39 166.8 143 61.5
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 2.2e-39 166.4 145 59.3
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 2.8e-39 166.0 141 61.0
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 2.8e-39 166.0 143 59.4
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 3.7e-39 165.6 143 60.1
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 3.7e-39 165.6 158 55.1
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 4.9e-39 165.2 150 58.7
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 4.9e-39 165.2 147 57.1
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 6.3e-39 164.9 143 60.8
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 6.3e-39 164.9 145 58.6
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.1e-38 164.1 143 60.8
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.4e-38 163.7 145 58.6
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 1.4e-38 163.7 143 59.4
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 1.4e-38 163.7 142 57.0
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.4e-38 163.7 145 57.9
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.4e-38 163.7 139 59.0
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 2.4e-38 162.9 145 57.2
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 2.4e-38 162.9 143 58.7
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 3.1e-38 162.5 145 57.9
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 4.1e-38 162.2 139 59.7
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 5.4e-38 161.8 141 59.6
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 5.4e-38 161.8 143 58.7
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 5.4e-38 161.8 145 56.6
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 7.0e-38 161.4 142 57.0
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 9.1e-38 161.0 143 58.7
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 1.2e-37 160.6 149 56.4
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.2e-37 160.6 149 56.4
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.6e-37 160.2 153 56.9
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 2.0e-37 159.8 145 57.9
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 2.7e-37 159.5 149 55.0
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 3.5e-37 159.1 145 55.9
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.0e-36 157.5 150 54.0
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 1.0e-36 157.5 136 58.1
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 1.3e-36 157.1 144 55.6
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 1.3e-36 157.1 141 57.4
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 1.3e-36 157.1 143 55.9
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 1.3e-36 157.1 143 55.2
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.3e-36 157.1 143 56.6
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 1.3e-36 157.1 141 55.3
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.7e-36 156.8 144 55.6
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 2.3e-36 156.4 148 53.4
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 5.0e-36 155.2 139 56.1
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 5.0e-36 155.2 143 56.6
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 5.0e-36 155.2 145 55.2
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 8.6e-36 154.5 143 57.3
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 8.6e-36 154.5 129 61.2
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 8.6e-36 154.5 143 55.2
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 5.5e-35 151.8 144 55.6
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 5.5e-35 151.8 143 55.9
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 7.2e-35 151.4 145 53.8
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 9.5e-35 151.0 140 56.4
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 1.2e-34 150.6 153 53.6
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 1.2e-34 150.6 129 58.9
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.2e-34 150.6 129 61.2
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 1.2e-34 150.6 151 52.3
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 1.6e-34 150.2 145 53.1
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 2.1e-34 149.8 145 55.9
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 2.8e-34 149.4 143 53.8
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 6.1e-34 148.3 148 52.7
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 6.1e-34 148.3 138 55.1
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 3.0e-33 146.0 153 51.0
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.0e-33 145.6 142 52.1
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.0e-33 145.6 142 52.1
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 4.0e-33 145.6 160 51.9
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 1.2e-32 144.1 145 53.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 3.4e-32 142.5 101 76.2
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 5.7e-32 141.7 143 54.5
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 7.5e-32 141.4 154 50.6
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.3e-31 140.6 143 54.5
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.7e-31 140.2 143 53.1
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.4e-30 137.1 135 51.1
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 1.8e-30 136.7 107 64.5
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 2.4e-30 136.3 111 60.4
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.2e-29 134.0 139 53.2
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.6e-29 133.7 155 50.3
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 2.7e-29 132.9 109 60.6
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 3.5e-29 132.5 140 52.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.9e-28 129.4 75 90.7
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 2.9e-28 129.4 135 48.1
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.9e-28 129.4 190 43.2
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.1e-27 127.5 123 58.5
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 9.5e-27 124.4 135 51.1
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.8e-26 122.9 172 42.4
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 1.4e-25 120.6 104 58.7
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.4e-25 120.6 139 46.8
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 5.2e-25 118.6 142 46.5
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 2.6e-24 116.3 152 41.4
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 3.7e-23 112.5 152 47.4
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 3.7e-23 112.5 141 44.7
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 4.1e-22 109.0 110 54.5
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 1.0e-20 104.4 137 44.5
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 1.3e-20 104.0 81 65.4
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 1.1e-19 100.9 65 73.8
C05p24340 Brassica napus HOM05D052559 ORTHO05D040828 1.9e-19 100.1 198 40.4
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 9.2e-14 81.3 71 57.7
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 1.7e-12 77.0 70 55.7
BcaC02g08720 Brassica carinata HOM05D028134 ORTHO05D014959 2.3e-12 76.6 52 78.8
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.3e-12 76.6 149 38.9
BcaC07g40802 Brassica carinata HOM05D000076 ORTHO05D014959 3.6e-10 69.3 42 85.7
BolC5t31167H Brassica oleracea HOM05D052559 ORTHO05D040828 4.0e-09 65.9 99 49.5
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 5.4e-06 55.5 57 50.9


User provided reference genes

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