Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14080 Brassica carinata HOM05D003669 ORTHO05D005046 2.1e-41 172.2 101 100.0
AT1G26650 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 2.5e-10 68.9 120 40.0
C05p24360 Brassica napus HOM05D003669 ORTHO05D005046 5.5e-10 67.8 120 39.2
BcaC05g26402 Brassica carinata HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
A09p40060 Brassica napus HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
BolC5t31170H Brassica oleracea HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
BraA09t39502Z Brassica rapa HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
CARHR025320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 43.3
Thhalv10008119m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
SpUn0008_0120 Schrenkiella parvula HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
SpUn0019_0020 Schrenkiella parvula HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
SpUn0296_0010 Schrenkiella parvula HOM05D003669 ORTHO05D005046 7.2e-10 67.4 120 39.2
AL1G39080 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 9.4e-10 67.0 120 39.2
Carub.0001s2438 Capsella rubella HOM05D003669 ORTHO05D005046 3.6e-09 65.1 120 38.3
Aa31LG7G8440 Aethionema arabicum HOM05D003669 ORTHO05D005046 3.0e-08 62.0 44 68.2
Gorai.013G089500 Gossypium raimondii HOM05D003669 ORTHO05D005046 3.0e-08 62.0 45 66.7
Duzib251G0808 Durio zibethinus HOM05D003669 ORTHO05D005046 5.2e-08 61.2 45 66.7
THA.LOC104822182 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 5.2e-08 61.2 44 65.9
Thecc.02G339000 Theobroma cacao HOM05D003669 ORTHO05D005046 5.2e-08 61.2 45 66.7
Gohir.D13G078300 Gossypium hirsutum HOM05D003669 ORTHO05D005046 6.7e-08 60.8 45 66.7
THA.LOC104808637 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 6.7e-08 60.8 44 65.9
AL2G28540 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 8.8e-08 60.5 44 65.9
AT1G69430 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 8.8e-08 60.5 44 65.9
Carub.0002s1603 Capsella rubella HOM05D003669 ORTHO05D005046 8.8e-08 60.5 44 65.9
CARHR062320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 8.8e-08 60.5 44 65.9
Prupe.1G280100 Prunus persica HOM05D003669 ORTHO05D005046 8.8e-08 60.5 45 64.4
THA.LOC104822905 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 8.8e-08 60.5 44 65.9
BcaB03g14707 Brassica carinata HOM05D003669 ORTHO05D005046 1.1e-07 60.1 44 65.9
GSVIVG01012487001 Vitis vinifera HOM05D003669 ORTHO05D005046 1.1e-07 60.1 45 64.4
Atru.chr11.1711 Acer truncatum HOM05D003669 ORTHO05D005046 1.5e-07 59.7 45 62.2
Aa31LG4G11440 Aethionema arabicum HOM05D003669 ORTHO05D005046 1.5e-07 59.7 44 63.6
COL.COLO4_27966 Corchorus olitorius HOM05D003669 ORTHO05D005046 1.5e-07 59.7 45 64.4
FAN08G0960 Fragaria x ananassa HOM05D003669 ORTHO05D005046 1.5e-07 59.7 45 62.2
SalBow2G2159 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.5e-07 59.7 43 67.4
SalBow2G3632 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.5e-07 59.7 43 67.4
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 2.0e-07 59.3 45 62.2
FvH4_5g29140 Fragaria vesca HOM05D003669 ORTHO05D005046 2.0e-07 59.3 45 62.2
FAN18G1113 Fragaria x ananassa HOM05D003669 ORTHO05D005046 2.0e-07 59.3 45 62.2
PSO063G3148 Papaver somniferum HOM05D003669 ORTHO05D005046 2.0e-07 59.3 45 62.2
PSO063G6284 Papaver somniferum HOM05D003669 ORTHO05D005046 2.0e-07 59.3 45 62.2
Cpa.g.sc1.72 Carica papaya HOM05D003669 ORTHO05D005046 2.6e-07 58.9 43 65.1
Duzib248G1252 Durio zibethinus HOM05D003669 ORTHO05D005046 2.6e-07 58.9 45 64.4
Migut.L01241 Erythranthe guttata HOM05D003669 ORTHO05D005046 2.6e-07 58.9 43 65.1
MD13G1068000 Malus domestica HOM05D003669 ORTHO05D005046 2.6e-07 58.9 45 62.2
MD16G1066800 Malus domestica HOM05D003669 ORTHO05D005046 2.6e-07 58.9 45 62.2
Oeu041090.1 Olea europaea HOM05D003669 ORTHO05D005046 2.6e-07 58.9 43 65.1
RcHm_v2.0_Chr7g0221801 Rosa chinensis HOM05D003669 ORTHO05D005046 2.6e-07 58.9 45 62.2
A07p35780 Brassica napus HOM05D003669 ORTHO05D005046 3.3e-07 58.5 44 63.6
C06p40420 Brassica napus HOM05D003669 ORTHO05D005046 3.3e-07 58.5 44 63.6
BolC6t39390H Brassica oleracea HOM05D003669 ORTHO05D005046 3.3e-07 58.5 44 63.6
BraA07t31164Z Brassica rapa HOM05D003669 ORTHO05D005046 3.3e-07 58.5 44 63.6
Cfa008924 Carpinus fangiana HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 62.8
CiPaw.05G129400 Carya illinoinensis HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 62.8
CiPaw.06G089100 Carya illinoinensis HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 62.8
Haze_11953 Corylus avellana HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 62.8
Thhalv10018794m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 3.3e-07 58.5 44 63.6
Glyma.07G227800 Glycine max HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 65.1
Glyma.20G030800 Glycine max HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 65.1
Phvul.002G168800 Phaseolus vulgaris HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 65.1
PGR102G2611 Punica granatum HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 62.8
SGA_v2.0_scaffold16G07737 Striga asiatica HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 65.1
TWI31G0268 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 3.3e-07 58.5 45 62.2
TWI75G1484 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 3.3e-07 58.5 45 62.2
VMungo0251G2119 Vigna mungo HOM05D003669 ORTHO05D005046 3.3e-07 58.5 43 65.1
Hma1.2p1_0354F.1_g133780 Hydrangea macrophylla HOM05D003669 ORTHO05D005046 4.4e-07 58.2 44 63.6
Peaxi162Scf00222g00021 Petunia axillaris HOM05D003669 ORTHO05D005046 4.4e-07 58.2 43 65.1
TAR006G0001 Trochodendron aralioides HOM05D003669 ORTHO05D005046 4.4e-07 58.2 45 62.2
Actinidia33230 Actinidia chinensis HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
EL10Ac6g13272 Beta vulgaris HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
Ca_23887_v3 Cicer arietinum L. HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
Duzib268G1480 Durio zibethinus HOM05D003669 ORTHO05D005046 5.7e-07 57.8 45 62.2
FAN04G2355 Fragaria x ananassa HOM05D003669 ORTHO05D005046 5.7e-07 57.8 45 60.0
Lj3P1033T30 Lonicera japonica HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
Lj4g0023966 Lotus japonicus HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 65.1
Lalb_Chr09g0329151 Lupinus albus HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 65.1
Medtr4g082350 Medicago truncatula HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
Psat7g135560 Pisum sativum HOM05D003669 ORTHO05D005046 5.7e-07 57.8 43 62.8
CSS0031393 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 7.5e-07 57.4 43 62.8
MBI19_g28315_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D005046 7.5e-07 57.4 43 62.8
Os07g0595900 Oryza sativa ssp. japonica HOM05D003669 ORTHO05D005046 7.5e-07 57.4 44 61.4
Potri.008G091500 Populus trichocarpa HOM05D003669 ORTHO05D005046 7.5e-07 57.4 43 60.5
TPR.G34083 Trifolium pratense HOM05D003669 ORTHO05D005046 7.5e-07 57.4 43 62.8
Ah.03g134650 Amaranthus hybridus HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 60.5
Aqoxy3G03503 Aquilegia oxysepala HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 62.8
CSS0046805 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 65.1
Nitab4.5_0000141g0030 Nicotiana tabacum HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 65.1
Nitab4.5_0000720g0060 Nicotiana tabacum HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 65.1
Peaxi162Scf00097g00103 Petunia axillaris HOM05D003669 ORTHO05D005046 9.7e-07 57.0 43 65.1
CAN.G964.18 Capsicum annuum HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 62.8
DCAR_023812 Daucus carota HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 60.5
ECA233G0305 Erigeron canadensis HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 58.1
FAN13G0674 Fragaria x ananassa HOM05D003669 ORTHO05D005046 1.3e-06 56.6 45 60.0
HanXRQChr08g0211271 Helianthus annuus HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 58.1
Lsat_1_v5_gn_8_49161 Lactuca sativa HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 58.1
Nn4g23289 Nelumbo nucifera HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 60.5
Sc11g0002160 Simmondsia chinensis HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 60.5
Solyc05g012870.1 Solanum lycopersicum HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 62.8
Sopen05g007700 Solanum pennellii HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 62.8
PGSC0003DMG400028338 Solanum tuberosum HOM05D003669 ORTHO05D005046 1.3e-06 56.6 43 62.8
Cc11_g12530 Coffea canephora HOM05D003669 ORTHO05D005046 1.7e-06 56.2 43 60.5
Nitab4.5_0000391g0150 Nicotiana tabacum HOM05D003669 ORTHO05D005046 1.7e-06 56.2 43 62.8
CANSAT64G1602 Cannabis sativa HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 62.8
CAN.G314.1 Capsicum annuum HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 62.8
Lj6P783T30 Lonicera japonica HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 60.5
Solyc01g010990.2 Solanum lycopersicum HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 62.8
Sopen01g006940 Solanum pennellii HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 62.8
PGSC0003DMG400026831 Solanum tuberosum HOM05D003669 ORTHO05D005046 2.2e-06 55.8 43 62.8
TAR381G0119 Trochodendron aralioides HOM05D003669 ORTHO05D005046 2.2e-06 55.8 45 57.8
ATR0730G059 Amborella trichopoda HOM05D003669 ORTHO05D005046 2.8e-06 55.5 43 60.5
Ciclev10033399m.g Citrus clementina HOM05D003669 ORTHO05D005046 2.8e-06 55.5 45 57.8
Manes.01G032000 Manihot esculenta HOM05D003669 ORTHO05D005046 2.8e-06 55.5 43 58.1
Rhsim12G0133100 Rhododendron simsii HOM05D003669 ORTHO05D005046 2.8e-06 55.5 43 55.8
ClCG05G023980 Citrullus lanatus HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 60.5
MELO3C012128.2 Cucumis melo HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 60.5
CsaV3_5G033070 Cucumis sativus L. HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 60.5
Potri.010G163400 Populus trichocarpa HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 58.1
QL03p069846 Quercus lobata HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 58.1
HPP92_023618 Vanilla planifolia HOM05D003669 ORTHO05D005046 3.7e-06 55.1 43 58.1
Gohir.A03G102600 Gossypium hirsutum HOM05D003669 ORTHO05D005046 4.8e-06 54.7 45 60.0
Gohir.D02G127500 Gossypium hirsutum HOM05D003669 ORTHO05D005046 4.8e-06 54.7 45 60.0
Gorai.005G143100 Gossypium raimondii HOM05D003669 ORTHO05D005046 4.8e-06 54.7 45 60.0
Peaxi162Scf00038g02649 Petunia axillaris HOM05D003669 ORTHO05D005046 4.8e-06 54.7 43 60.5
Sed0017288 Sechium edule HOM05D003669 ORTHO05D005046 4.8e-06 54.7 43 58.1


User provided reference genes

Program Settings