Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 7.1e-66 253.8 132 100.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 4.2e-58 228.0 133 90.2
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.2e-57 226.5 133 89.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.3e-56 223.0 133 87.2
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 7.4e-55 217.2 147 83.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-54 215.7 139 84.2
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-53 211.8 143 83.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.1e-53 211.8 133 85.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 4.0e-53 211.5 116 91.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 6.9e-53 210.7 134 83.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-52 209.1 113 94.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 5.8e-52 207.6 141 83.0
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 7.6e-52 207.2 138 81.9
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.1e-50 203.4 129 82.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 7.1e-50 200.7 148 76.4
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 7.1e-50 200.7 121 84.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.7e-49 198.7 116 86.2
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 3.5e-49 198.4 121 84.3
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.3e-48 195.7 121 81.8
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 2.3e-48 195.7 121 81.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 6.7e-48 194.1 122 79.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 8.7e-48 193.7 131 77.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 8.7e-48 193.7 123 78.9
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.1e-47 193.4 132 75.0
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.1e-47 193.4 121 80.2
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-47 193.0 123 78.9
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-47 193.0 123 78.9
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.5e-47 193.0 123 78.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.5e-47 193.0 123 79.7
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.9e-47 192.6 121 78.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 4.3e-47 191.4 120 79.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.3e-46 189.9 122 77.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.3e-46 189.9 121 79.3
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.3e-46 189.9 118 78.8
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 3.7e-46 188.3 115 81.7
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 4.8e-46 188.0 123 78.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 8.2e-46 187.2 117 80.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-45 186.8 124 76.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.4e-45 186.4 115 80.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.4e-45 185.7 121 76.0
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.4e-45 185.7 125 78.4
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 4.0e-45 184.9 126 74.6
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.0e-45 184.9 132 72.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.0e-45 184.9 114 78.1
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 6.9e-45 184.1 121 76.9
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.5e-44 183.0 126 73.8
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.5e-44 183.0 118 77.1
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.0e-44 182.6 126 71.4
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 2.6e-44 182.2 118 77.1
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 3.4e-44 181.8 126 74.6
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.5e-44 181.4 123 73.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 7.6e-44 180.6 120 76.7
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.3e-43 179.9 122 76.2
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.2e-43 179.1 116 78.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 3.8e-43 178.3 138 76.1
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 4.9e-43 177.9 120 75.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 8.4e-43 177.2 139 68.3
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 8.4e-43 177.2 139 68.3
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 8.4e-43 177.2 127 74.0
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.1e-42 176.8 123 75.6
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.4e-42 176.4 145 64.8
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.4e-42 176.4 145 64.8
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 5.5e-42 174.5 115 74.8
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.5e-42 174.5 123 75.6
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 5.5e-42 174.5 118 74.6
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 7.1e-42 174.1 116 75.9
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 9.3e-42 173.7 128 72.7
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.2e-41 173.3 113 77.9
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.2e-41 173.3 114 78.9
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.2e-41 173.3 124 71.0
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.1e-41 172.6 130 70.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.7e-41 172.2 131 67.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.0e-40 170.2 120 72.5
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.0e-40 170.2 117 70.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.1e-40 167.9 120 74.2
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 6.7e-40 167.5 116 71.6
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 6.7e-40 167.5 122 71.3
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.5e-39 166.4 127 69.3
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 3.3e-39 165.2 126 70.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 7.4e-39 164.1 118 69.5
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 9.7e-39 163.7 118 69.5
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.3e-38 163.3 117 71.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.8e-38 162.2 111 77.5
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.8e-38 162.2 127 66.9
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-38 161.8 111 77.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 4.8e-38 161.4 117 68.4
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 6.3e-38 161.0 129 65.9
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.4e-37 159.1 157 56.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 5.3e-37 157.9 118 66.9
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 5.3e-37 157.9 116 68.1
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.2e-36 156.8 118 65.3
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 5.9e-36 154.5 100 82.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 5.9e-36 154.5 123 70.7
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 7.6e-36 154.1 178 50.6
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 2.2e-35 152.5 129 65.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 8.5e-35 150.6 107 70.1
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.9e-34 149.4 137 61.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 2.5e-34 149.1 115 63.5
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.2e-34 148.7 115 69.6
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.7e-33 145.6 115 68.7
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.6e-33 145.2 113 69.9
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 6.1e-33 144.4 123 63.4
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.8e-32 142.9 132 62.9
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 2.3e-32 142.5 121 62.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.1e-31 140.2 90 76.7
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 3.3e-31 138.7 123 61.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 5.7e-31 137.9 133 59.4
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.2e-30 136.0 159 52.8
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.8e-30 135.6 88 73.9
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.8e-30 135.6 133 58.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 8.2e-30 134.0 128 53.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 4.5e-28 128.3 84 75.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 2.9e-27 125.6 118 59.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.9e-27 125.6 119 57.1
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.2e-26 122.1 84 72.6
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 4.2e-26 121.7 106 56.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.7e-25 119.0 106 56.6
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 7.9e-25 117.5 178 42.1
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.8e-24 116.3 105 54.3
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.9e-24 115.2 106 62.3
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 6.7e-24 114.4 82 74.4
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 3.7e-22 108.6 70 74.3
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 6.3e-22 107.8 69 75.4
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 4.1e-21 105.1 70 71.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.9e-19 99.0 83 66.3
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 1.5e-15 86.7 49 87.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.7e-14 83.2 60 65.0
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.0e-11 73.9 106 41.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.1e-09 66.2 48 64.6
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.8e-08 63.2 47 68.1
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-08 62.8 54 66.7


User provided reference genes

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