Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 6.2e-50 200.7 115 100.0
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 1.1e-35 153.3 102 88.2
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-34 147.9 103 90.3
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-34 147.9 103 90.3
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 8.1e-34 147.1 103 88.3
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 2.4e-33 145.6 115 77.4
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 2.4e-33 145.6 115 77.4
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 2.4e-33 145.6 104 88.5
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 2.4e-33 145.6 115 77.4
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 9.0e-33 143.7 115 77.4
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 9.0e-33 143.7 115 77.4
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 5.8e-32 141.0 71 90.1
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 8.4e-31 137.1 102 82.4
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.1e-29 132.5 71 90.1
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 2.4e-25 119.0 75 78.7
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.2e-24 116.7 71 78.9
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 3.8e-23 111.7 116 67.2
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 5.5e-14 81.3 57 63.2
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.6e-13 78.2 57 61.4
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.8e-10 68.9 44 68.2
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 6.3e-10 67.8 44 65.9
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 8.2e-10 67.4 48 62.5
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 1.1e-09 67.0 42 66.7
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 1.1e-09 67.0 59 47.5
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.1e-09 67.0 46 56.5
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.4e-09 65.9 44 65.9
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 4.1e-09 65.1 46 52.2
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 4.1e-09 65.1 44 63.6
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 5.3e-09 64.7 44 63.6
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 5.3e-09 64.7 44 63.6
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 5.3e-09 64.7 44 63.6
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 5.3e-09 64.7 44 63.6
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.2e-08 63.5 44 61.4
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.2e-08 63.5 42 57.1
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.2e-08 63.5 48 50.0
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 1.5e-08 63.2 68 41.2
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 2.0e-08 62.8 44 61.4
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 2.0e-08 62.8 44 61.4
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 2.0e-08 62.8 44 61.4
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 4.5e-08 61.6 47 48.9
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 5.9e-08 61.2 44 59.1
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 5.9e-08 61.2 44 59.1
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 5.9e-08 61.2 44 59.1
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 7.7e-08 60.8 47 48.9
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 7.7e-08 60.8 56 46.4
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 7.7e-08 60.8 47 48.9
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 1.0e-07 60.5 60 43.3
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 1.7e-07 59.7 50 46.0
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 1.7e-07 59.7 48 47.9
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 2.9e-07 58.9 58 41.4
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 3.8e-07 58.5 49 46.9
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 8.5e-07 57.4 47 44.7
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 8.5e-07 57.4 52 44.2
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 8.5e-07 57.4 52 44.2
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 8.5e-07 57.4 52 44.2
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 1.1e-06 57.0 56 48.2
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.4e-06 56.6 47 44.7
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.4e-06 56.6 47 44.7
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.4e-06 56.6 47 44.7
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 1.9e-06 56.2 50 42.0
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 2.5e-06 55.8 47 44.7
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 2.5e-06 55.8 48 45.8
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 3.2e-06 55.5 48 43.8
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 3.2e-06 55.5 48 43.8
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 5.5e-06 54.7 47 46.8
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 5.5e-06 54.7 48 43.8
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 9.4e-06 53.9 52 42.3


User provided reference genes

Program Settings