Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14030 Brassica carinata HOM05D008071 ORTHO05D009954 1.5e-68 262.7 134 100.0
BcaB03g14033 Brassica carinata HOM05D008071 ORTHO05D009954 7.4e-63 243.8 126 98.4
A07p12520 Brassica napus HOM05D008071 ORTHO05D009954 3.2e-58 228.4 126 92.1
BraA07t29031Z Brassica rapa HOM05D008071 ORTHO05D009954 5.2e-48 194.5 113 87.6
BcaC06g35221 Brassica carinata HOM05D008071 ORTHO05D009954 1.1e-37 160.2 91 87.9
C07p18520 Brassica napus HOM05D008071 ORTHO05D009954 1.1e-37 160.2 91 87.9
BolC7t42363H Brassica oleracea HOM05D008071 ORTHO05D009954 2.4e-37 159.1 91 86.8
A09p39180 Brassica napus HOM05D008071 ORTHO05D009954 1.4e-32 143.3 124 56.5
C05p25190 Brassica napus HOM05D008071 ORTHO05D009954 4.0e-32 141.7 124 54.8
BraA09t39418Z Brassica rapa HOM05D008071 ORTHO05D009954 4.0e-32 141.7 124 55.6
BcaB03g14032 Brassica carinata HOM05D008071 ORTHO05D009954 5.2e-32 141.4 70 100.0
BolC3t19605H Brassica oleracea HOM05D008071 ORTHO05D009954 2.2e-30 136.0 123 53.7
Thhalv10009039m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 6.4e-30 134.4 122 57.4
C03p73100 Brassica napus HOM05D008071 ORTHO05D009954 8.3e-30 134.0 123 52.8
A08p26850 Brassica napus HOM05D008071 ORTHO05D009954 5.4e-29 131.3 124 53.2
Carub.0001s2525 Capsella rubella HOM05D008071 ORTHO05D009954 6.6e-27 124.4 127 53.5
CARHR026210 Cardamine hirsuta HOM05D008071 ORTHO05D009954 5.6e-26 121.3 126 53.2
Sp1g22940 Schrenkiella parvula HOM05D008071 ORTHO05D009954 8.1e-25 117.5 125 51.2
Thhalv10009029m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 2.3e-24 115.9 126 52.4
AT5G05020 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 1.3e-22 110.2 131 48.1
AL1G40040 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 4.9e-22 108.2 125 50.4
BcaC01g01683 Brassica carinata HOM05D008071 ORTHO05D009954 4.9e-22 108.2 123 49.6
BolC3t19602H Brassica oleracea HOM05D008071 ORTHO05D009954 4.9e-22 108.2 123 49.6
CARHR026190 Cardamine hirsuta HOM05D008071 ORTHO05D009954 1.4e-21 106.7 126 47.6
A07p31290 Brassica napus HOM05D008071 ORTHO05D009954 2.4e-21 105.9 134 45.5
BraA07t30762Z Brassica rapa HOM05D008071 ORTHO05D009954 2.4e-21 105.9 134 45.5
C03p73050 Brassica napus HOM05D008071 ORTHO05D009954 5.4e-21 104.8 123 48.8
THA.LOC104827708 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 5.4e-21 104.8 129 48.8
Carub.0006s3123 Capsella rubella HOM05D008071 ORTHO05D009954 9.2e-21 104.0 127 47.2
CARHR136500 Cardamine hirsuta HOM05D008071 ORTHO05D009954 9.2e-21 104.0 131 44.3
BcaC05g26476 Brassica carinata HOM05D008071 ORTHO05D009954 1.2e-20 103.6 86 61.6
BraA08t34634Z Brassica rapa HOM05D008071 ORTHO05D009954 1.2e-20 103.6 123 47.2
Carub.0001s2524 Capsella rubella HOM05D008071 ORTHO05D009954 1.3e-19 100.1 125 45.6
A04p31550 Brassica napus HOM05D008071 ORTHO05D009954 5.1e-19 98.2 126 43.7
BraA04t18611Z Brassica rapa HOM05D008071 ORTHO05D009954 5.1e-19 98.2 126 43.7
AL4G39460 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 6.6e-19 97.8 124 46.8
AT2G41400 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 6.6e-19 97.8 122 46.7
C04p68980 Brassica napus HOM05D008071 ORTHO05D009954 6.6e-19 97.8 126 43.7
BcaC02g12899 Brassica carinata HOM05D008071 ORTHO05D009954 1.1e-18 97.1 126 42.9
BolC4t28398H Brassica oleracea HOM05D008071 ORTHO05D009954 1.1e-18 97.1 126 43.7
Aa31LG7G9180 Aethionema arabicum HOM05D008071 ORTHO05D009954 3.3e-18 95.5 126 44.4
AT2G41390 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 3.3e-18 95.5 124 45.2
Carub.0001s2523 Capsella rubella HOM05D008071 ORTHO05D009954 5.6e-18 94.7 126 42.1
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 9.5e-18 94.0 124 44.4
BcaB03g12034 Brassica carinata HOM05D008071 ORTHO05D009954 1.2e-17 93.6 131 42.7
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 1.6e-17 93.2 122 43.4
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 1.6e-17 93.2 122 43.4
Sp2g26770 Schrenkiella parvula HOM05D008071 ORTHO05D009954 1.6e-17 93.2 126 46.0
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 2.1e-17 92.8 122 43.4
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 2.1e-17 92.8 122 43.4
BolC5t31253H Brassica oleracea HOM05D008071 ORTHO05D009954 4.7e-17 91.7 124 42.7
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 1.8e-16 89.7 122 42.6
THA.LOC104827706 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 2.6e-15 85.9 127 40.2
BcaB03g15516 Brassica carinata HOM05D008071 ORTHO05D009954 9.9e-15 84.0 124 40.3
Sp5g23220 Schrenkiella parvula HOM05D008071 ORTHO05D009954 9.9e-15 84.0 122 40.2
BcaB03g12032 Brassica carinata HOM05D008071 ORTHO05D009954 7.1e-13 77.8 125 39.2
BcaC08g45854 Brassica carinata HOM05D008071 ORTHO05D009954 7.8e-12 74.3 134 39.6
Thhalv10009714m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 4.3e-10 68.6 78 55.1
Rhsim03G0040600 Rhododendron simsii HOM05D008071 ORTHO05D009954 7.3e-10 67.8 126 30.2
Eucgr.K01697 Eucalyptus grandis HOM05D008071 ORTHO05D009954 1.4e-08 63.5 125 35.2
Eucgr.K01698 Eucalyptus grandis HOM05D008071 ORTHO05D009954 4.0e-08 62.0 125 34.4
AL2G27010 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 6.8e-08 61.2 77 45.5
Nitab4.5_0000123g0160 Nicotiana tabacum HOM05D013183 ORTHO05D009954 1.5e-07 60.1 126 28.6
Nitab4.5_0006448g0040 Nicotiana tabacum HOM05D013183 ORTHO05D009954 5.8e-07 58.2 124 28.2
QL07p015274 Quercus lobata HOM05D008071 ORTHO05D009954 3.8e-06 55.5 112 31.2
BcaB03g12033 Brassica carinata HOM05D008071 ORTHO05D009954 6.4e-06 54.7 61 54.1
ATR0006G003 Amborella trichopoda HOM05D008071 ORTHO05D009954 8.4e-06 54.3 111 32.4


User provided reference genes

Program Settings