Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-91 339.3 171 100.0
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-72 275.8 171 84.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-72 275.8 171 84.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-66 256.1 170 80.6
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-66 256.1 170 80.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-66 256.1 170 80.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 5.1e-56 221.5 169 68.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 6.6e-56 221.1 174 66.7
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 4.7e-54 214.9 169 66.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 9.9e-52 207.2 169 65.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 6.4e-51 204.5 169 65.1
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-50 203.0 169 64.5
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.9e-48 195.3 184 58.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 4.7e-46 188.3 172 62.8
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-43 179.5 155 66.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 8.4e-43 177.6 200 53.5
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-42 177.2 194 54.6
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.2e-42 175.6 174 56.3
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.2e-42 175.6 184 54.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.2e-42 175.3 172 57.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 5.4e-42 174.9 183 54.6
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 9.3e-42 174.1 173 57.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-41 173.3 194 54.1
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-41 172.9 189 54.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 6.0e-41 171.4 180 53.9
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.1e-40 168.3 182 51.6
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-40 167.9 193 52.8
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.5e-39 166.8 180 54.4
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-39 166.8 180 51.7
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-39 166.0 202 51.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 7.3e-39 164.5 191 51.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.6e-39 164.1 207 50.7
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.1e-38 162.9 184 54.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-37 160.6 185 52.4
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-37 159.5 204 49.5
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-37 159.1 198 49.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-37 159.1 198 49.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 6.9e-37 157.9 178 51.7
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 9.0e-37 157.5 178 51.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-37 157.5 178 51.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-36 156.0 178 51.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.6e-36 156.0 190 47.9
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 6.4e-35 151.4 180 48.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.4e-34 150.2 181 50.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-34 149.8 178 48.9
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.2e-34 149.1 185 47.0
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.2e-34 148.7 192 45.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.2e-34 148.7 192 49.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-33 146.7 155 54.8
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.6e-33 146.7 155 54.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-33 146.7 191 47.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 6.0e-33 144.8 211 45.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.7e-32 143.3 193 46.1
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.7e-32 143.3 193 47.2
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.3e-32 142.9 179 46.4
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.0e-32 142.5 195 46.7
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 3.3e-31 139.0 195 45.1
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.6e-31 138.3 207 42.5
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 7.3e-31 137.9 182 45.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-30 136.7 198 43.4
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.8e-30 136.0 184 43.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-29 134.0 157 51.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-29 134.0 157 51.0
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.1e-29 134.0 185 42.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.2e-28 130.6 188 41.5
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.2e-28 130.6 184 42.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.0e-28 129.8 205 39.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.0e-28 129.8 196 40.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.6e-28 129.4 188 42.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 3.4e-28 129.0 190 41.1
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.5e-28 128.6 192 41.7
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 9.9e-28 127.5 186 45.2
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.7e-27 126.7 209 38.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.2e-27 126.3 209 41.6
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.9e-27 125.9 211 37.4
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.9e-27 125.9 211 37.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 2.9e-27 125.9 229 38.0
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.9e-27 125.2 191 39.8
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.9e-27 125.2 177 45.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 8.4e-27 124.4 207 37.7
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.1e-26 124.0 188 41.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-26 124.0 191 40.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.9e-26 123.2 194 40.2
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.4e-26 122.9 174 42.5
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 3.2e-26 122.5 176 40.9
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.2e-26 122.1 177 43.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 4.2e-26 122.1 202 39.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 5.4e-26 121.7 127 52.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 7.1e-26 121.3 187 40.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 7.1e-26 121.3 198 38.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 9.3e-26 120.9 185 40.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.2e-25 120.6 183 40.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.6e-25 120.2 201 37.8
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-25 120.2 182 42.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.1e-25 119.8 217 38.2
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.7e-25 119.4 182 40.1
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.7e-25 119.4 182 40.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 3.5e-25 119.0 171 43.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.5e-25 119.0 211 38.9
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 6.0e-25 118.2 196 39.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-24 117.5 174 40.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.3e-24 117.1 171 42.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.3e-24 117.1 195 38.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.3e-24 117.1 189 43.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.8e-24 116.7 204 38.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.3e-24 116.3 211 36.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.3e-24 116.3 215 39.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.0e-24 115.9 204 38.7
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-24 115.9 197 37.6
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-24 115.5 200 37.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.9e-24 115.5 197 38.1
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 5.1e-24 115.2 199 37.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 6.7e-24 114.8 154 46.8
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.5e-23 113.6 190 36.8
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.5e-23 112.8 196 38.3
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.3e-23 112.1 203 39.4
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 4.3e-23 112.1 184 37.0
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.6e-23 111.7 209 35.4
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 7.4e-23 111.3 176 38.6
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.6e-22 110.2 209 34.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.1e-22 109.8 189 38.1
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.8e-22 109.4 206 36.4
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.7e-22 109.0 187 39.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.7e-22 109.0 193 39.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.8e-22 108.6 198 38.4
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 4.8e-22 108.6 197 37.6
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.8e-22 108.6 245 33.9
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 6.2e-22 108.2 169 40.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-21 107.5 203 38.4
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.4e-21 107.1 217 34.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.4e-21 107.1 195 36.4
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.8e-21 106.7 181 37.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.8e-21 106.7 217 34.6
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.4e-21 106.3 204 34.8
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.3e-21 105.1 196 37.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.6e-20 102.8 184 35.3
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.6e-20 102.8 170 41.2
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-20 102.8 152 42.8
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.4e-20 102.4 211 36.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.5e-20 102.1 225 34.2
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.5e-20 102.1 188 36.2
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 5.8e-20 101.7 196 36.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.0e-19 100.9 169 38.5
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.3e-19 100.5 192 39.1
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.8e-19 99.0 236 33.5
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.8e-19 99.0 224 32.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.9e-19 98.6 241 32.0
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.1e-18 97.4 143 42.0
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.1e-18 97.4 188 34.6
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.1e-18 97.4 191 34.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.5e-18 96.3 181 37.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.5e-18 96.3 188 35.6
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.2e-18 95.9 181 38.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 4.2e-18 95.5 177 36.2
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 9.3e-18 94.4 178 36.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.2e-17 94.0 225 30.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 4.6e-17 92.0 231 30.3
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.1e-15 87.4 201 31.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.4e-15 84.7 218 31.7
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-14 83.6 214 32.7
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-14 83.2 132 41.7
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.1e-13 79.3 98 52.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.5e-12 77.0 152 35.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-11 73.9 216 29.2
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.4e-10 70.5 142 35.2
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.9e-10 70.1 173 30.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-09 67.4 142 33.8
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.7e-09 66.2 157 31.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 5.1e-08 62.0 206 28.2
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.7e-08 61.6 183 30.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.5e-07 59.7 206 27.7
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 7.4e-07 58.2 112 33.9
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.6e-06 57.0 93 35.5
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 8.2e-06 54.7 138 29.0


User provided reference genes

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