Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13959 Brassica carinata HOM05D003399 ORTHO05D003393 1.4e-136 489.6 240 100.0
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 2.4e-112 409.1 236 86.4
BcaC06g35330 Brassica carinata HOM05D003399 ORTHO05D003393 9.1e-112 407.1 237 86.1
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 9.1e-112 407.1 236 86.0
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 2.5e-85 319.3 268 66.8
Thhalv10009825m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 8.0e-84 314.3 270 65.9
BcaB03g12138 Brassica carinata HOM05D003399 ORTHO05D003393 9.8e-82 307.4 264 64.0
BcaC01g00006 Brassica carinata HOM05D003399 ORTHO05D003393 1.6e-79 300.1 265 62.6
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 2.0e-79 299.7 264 62.5
BolC5t31399H Brassica oleracea HOM05D003399 ORTHO05D003393 6.0e-79 298.1 264 64.0
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 1.7e-78 296.6 264 63.6
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 1.7e-78 296.6 264 63.6
BolC3t19722H Brassica oleracea HOM05D003399 ORTHO05D003393 1.1e-77 293.9 264 61.7
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 1.9e-77 293.1 264 63.3
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 1.9e-77 293.1 264 63.3
A08p25920 Brassica napus HOM05D003399 ORTHO05D003393 8.1e-76 287.7 268 59.3
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 1.1e-72 277.3 272 57.7
AL1G41590 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 3.9e-70 268.9 268 60.4
CARHR027530 Cardamine hirsuta HOM05D003399 ORTHO05D003393 6.4e-65 251.5 272 58.5
AT1G28080 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 5.4e-64 248.4 268 57.1
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 2.5e-61 239.6 271 55.4
BcaB03g13958 Brassica carinata HOM05D003399 ORTHO05D003393 2.1e-60 236.5 116 100.0
Aa31sc300G10 Aethionema arabicum HOM05D003399 ORTHO05D003393 3.8e-25 119.4 215 44.7
BcaB03g12139 Brassica carinata HOM05D003399 ORTHO05D003393 3.8e-17 92.8 80 62.5
BcaC05g26623 Brassica carinata HOM05D003399 ORTHO05D003393 1.1e-11 74.7 127 43.3
CSS0040305 Camellia sinensis var. sinensis HOM05D003399 ORTHO05D006018 1.2e-10 71.2 182 32.4
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.2e-10 71.2 175 33.7
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 3.4e-10 69.7 174 36.2
AL6G23870 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 4.5e-10 69.3 174 36.2
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 4.5e-10 69.3 174 32.2
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 4.5e-10 69.3 174 32.2
BcaB01g05366 Brassica carinata HOM05D003399 ORTHO05D003393 1.3e-09 67.8 176 32.4
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 1.3e-09 67.8 176 32.4
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 1.3e-09 67.8 176 32.4
BcaC04g19132 Brassica carinata HOM05D003399 ORTHO05D003393 2.2e-09 67.0 180 31.1
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 2.2e-09 67.0 180 31.1
Thhalv10015692m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 2.9e-09 66.6 184 33.2
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 6.5e-09 65.5 182 30.8
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 1.1e-08 64.7 175 34.9
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.9e-08 63.9 185 31.9
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 3.2e-08 63.2 231 28.1
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 5.5e-08 62.4 256 26.2
THA.LOC104814204 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 5.5e-08 62.4 181 30.9
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 1.2e-07 61.2 182 31.3
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 1.2e-07 61.2 182 31.3
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 2.7e-07 60.1 76 44.7
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 2.7e-07 60.1 198 29.8
Cfa009429 Carpinus fangiana HOM05D003399 ORTHO05D003393 3.6e-07 59.7 34 70.6
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 3.6e-07 59.7 72 44.4
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 4.7e-07 59.3 204 29.9
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 4.7e-07 59.3 30 80.0
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 4.7e-07 59.3 30 80.0
Lj6P836T14 Lonicera japonica HOM05D003399 ORTHO05D003393 4.7e-07 59.3 30 76.7
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 4.7e-07 59.3 30 80.0
FAN07G1125 Fragaria x ananassa HOM05D003399 ORTHO05D003393 6.1e-07 58.9 33 69.7
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 8.0e-07 58.5 266 25.9
A02p01800 Brassica napus HOM05D003399 ORTHO05D003393 8.0e-07 58.5 180 33.3
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 8.0e-07 58.5 180 33.3
CiPaw.05G103400 Carya illinoinensis HOM05D003399 ORTHO05D003393 8.0e-07 58.5 232 25.9
BcaNung01873 Brassica carinata HOM05D003399 ORTHO05D003393 1.0e-06 58.2 179 31.3
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 1.4e-06 57.8 60 48.3
Cpa.g.sc207.7 Carica papaya HOM05D003399 ORTHO05D003393 2.3e-06 57.0 32 71.9
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 3.0e-06 56.6 261 26.4
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 3.0e-06 56.6 34 70.6
CiPaw.06G108000 Carya illinoinensis HOM05D003399 ORTHO05D003393 3.9e-06 56.2 216 28.2
Ciclev10033818m.g Citrus clementina HOM05D003399 ORTHO05D003393 3.9e-06 56.2 30 70.0
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 3.9e-06 56.2 30 70.0
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 3.9e-06 56.2 30 70.0
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 3.9e-06 56.2 30 70.0
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 3.9e-06 56.2 30 73.3
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 5.2e-06 55.8 30 70.0
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 5.2e-06 55.8 261 25.7
Manes.09G186300 Manihot esculenta HOM05D003399 ORTHO05D003393 5.2e-06 55.8 30 70.0
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 5.2e-06 55.8 73 42.5
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 5.2e-06 55.8 37 64.9
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 5.2e-06 55.8 34 67.6
Aa31LG3G14410 Aethionema arabicum HOM05D003399 ORTHO05D003393 6.7e-06 55.5 30 73.3
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 6.7e-06 55.5 30 70.0
Haze_12480 Corylus avellana HOM05D003399 ORTHO05D003393 8.8e-06 55.1 34 64.7
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 8.8e-06 55.1 30 73.3


User provided reference genes

Program Settings