Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 1.5e-65 252.7 126 100.0
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 4.0e-58 228.0 126 90.5
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 8.9e-58 226.9 126 89.7
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 8.9e-58 226.9 126 90.5
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 8.9e-58 226.9 126 89.7
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 2.6e-57 225.3 126 91.3
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 4.1e-55 218.0 126 87.3
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 1.6e-51 206.1 127 82.7
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 1.0e-50 203.4 129 82.2
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 2.6e-49 198.7 129 81.4
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 2.6e-49 198.7 129 81.4
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 7.0e-47 190.7 129 79.8
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 1.6e-46 189.5 129 79.1
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 3.5e-46 188.3 129 76.0
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 8.6e-45 183.7 128 74.2
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 1.5e-44 183.0 130 75.4
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 6.2e-43 177.6 130 72.3
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 8.3e-40 167.2 127 69.3
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 6.6e-37 157.5 126 65.1
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 1.4e-23 113.2 128 55.5
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 4.2e-23 111.7 101 62.4
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 4.2e-23 111.7 94 60.6
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 9.3e-23 110.5 99 59.6
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 1.6e-22 109.8 103 60.2
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.1e-22 109.4 85 68.2
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 2.7e-22 109.0 131 50.4
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 2.7e-22 109.0 105 56.2
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 1.3e-21 106.7 71 77.5
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 1.3e-21 106.7 99 59.6
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 1.3e-21 106.7 83 63.9
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 1.7e-21 106.3 77 71.4
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 2.3e-21 105.9 77 71.4
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 2.3e-21 105.9 76 73.7
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 3.9e-21 105.1 75 66.7
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 5.1e-21 104.8 75 72.0
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 5.1e-21 104.8 76 73.7
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 6.6e-21 104.4 99 56.6
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 6.6e-21 104.4 134 47.0
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 6.6e-21 104.4 71 73.2
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 6.6e-21 104.4 75 73.3
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 8.7e-21 104.0 103 55.3
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.1e-20 103.6 71 73.2
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 1.1e-20 103.6 76 72.4
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 1.5e-20 103.2 126 51.6
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 1.5e-20 103.2 75 72.0
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.5e-20 103.2 71 73.2
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 1.9e-20 102.8 75 68.0
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 1.9e-20 102.8 84 63.1
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 1.9e-20 102.8 75 70.7
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 1.9e-20 102.8 83 65.1
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 2.5e-20 102.4 84 64.3
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 3.3e-20 102.1 71 71.8
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 4.3e-20 101.7 75 65.3
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 5.6e-20 101.3 71 71.8
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 5.6e-20 101.3 71 71.8
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 5.6e-20 101.3 84 60.7
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 5.6e-20 101.3 84 60.7
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 7.3e-20 100.9 125 48.8
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 7.3e-20 100.9 77 63.6
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 7.3e-20 100.9 70 74.3
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 1.6e-19 99.8 75 66.7
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.6e-19 99.8 76 71.1
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 2.1e-19 99.4 75 66.7
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 2.8e-19 99.0 93 57.0
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 2.8e-19 99.0 70 72.9
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 4.8e-19 98.2 75 69.3
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 4.8e-19 98.2 81 63.0
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 4.8e-19 98.2 81 63.0
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 4.8e-19 98.2 71 73.2
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 6.2e-19 97.8 128 43.8
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 8.1e-19 97.4 75 65.3
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 8.1e-19 97.4 79 65.8
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 1.1e-18 97.1 82 61.0
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 1.1e-18 97.1 75 66.7
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 1.4e-18 96.7 99 53.5
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.8e-18 96.3 75 66.7
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 2.4e-18 95.9 75 61.3
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 3.1e-18 95.5 71 66.2
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 3.1e-18 95.5 86 55.8
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 3.1e-18 95.5 75 62.7
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 4.0e-18 95.1 74 64.9
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 5.3e-18 94.7 75 61.3
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 5.3e-18 94.7 81 61.7
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 5.3e-18 94.7 82 59.8
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 5.3e-18 94.7 75 61.3
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 5.3e-18 94.7 75 62.7
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 9.0e-18 94.0 75 69.3
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 1.2e-17 93.6 84 57.1
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 1.5e-17 93.2 87 60.9
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 1.5e-17 93.2 72 62.5
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 2.0e-17 92.8 76 60.5
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 4.4e-17 91.7 75 58.7
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 4.4e-17 91.7 68 67.6
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 4.4e-17 91.7 81 58.0
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 5.8e-17 91.3 71 67.6
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 9.9e-17 90.5 97 52.6
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 2.2e-16 89.4 66 63.6
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 3.8e-16 88.6 60 70.0
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 4.9e-16 88.2 102 48.0
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 4.9e-16 88.2 64 70.3
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 4.9e-16 88.2 64 70.3
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 4.9e-16 88.2 64 70.3
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 8.4e-16 87.4 68 67.6
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 8.4e-16 87.4 72 61.1
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 1.9e-15 86.3 61 70.5
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 2.4e-15 85.9 75 54.7
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 7.1e-15 84.3 71 60.6
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 9.3e-15 84.0 55 67.3
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 1.2e-14 83.6 121 43.0
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 7.9e-14 80.9 80 52.5
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 1.7e-13 79.7 63 63.5
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 1.1e-12 77.0 86 44.2
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 6.9e-10 67.8 50 56.0
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 9.0e-10 67.4 53 66.0
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 7.6e-09 64.3 58 60.3
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 6.4e-08 61.2 69 40.6
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8


User provided reference genes

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