Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13845 Brassica carinata HOM05D001478 ORTHO05D002240 3.7e-64 248.1 127 100.0
Sp1g25920 Schrenkiella parvula HOM05D001478 ORTHO05D002240 9.9e-33 143.7 131 67.9
AL1G43950 Arabidopsis lyrata HOM05D001478 ORTHO05D002240 1.9e-31 139.4 125 64.0
BraA09t39169Z Brassica rapa HOM05D001478 ORTHO05D002240 3.5e-30 135.2 130 63.1
Carub.0001s2828 Capsella rubella HOM05D001478 ORTHO05D002240 2.3e-29 132.5 134 60.4
A09p36470 Brassica napus HOM05D001478 ORTHO05D002240 3.0e-29 132.1 129 62.0
BcaC05g27021 Brassica carinata HOM05D001478 ORTHO05D002240 5.1e-29 131.3 127 62.2
C05p28850 Brassica napus HOM05D001478 ORTHO05D002240 5.1e-29 131.3 127 62.2
BolC5t31603H Brassica oleracea HOM05D001478 ORTHO05D002240 5.1e-29 131.3 127 62.2
Aa31LG6G5610 Aethionema arabicum HOM05D001478 ORTHO05D002240 8.7e-29 130.6 130 61.5
Thhalv10007824m.g Eutrema salsugineum HOM05D001478 ORTHO05D002240 8.7e-29 130.6 134 59.7
AT1G30050 Arabidopsis thaliana HOM05D001478 ORTHO05D002240 2.5e-28 129.0 129 60.5
CARHR029350 Cardamine hirsuta HOM05D001478 ORTHO05D002240 2.5e-28 129.0 140 57.9
BcaB07g32605 Brassica carinata HOM05D001478 ORTHO05D002240 7.4e-28 127.5 134 59.0
THA.LOC104806656 Tarenaya hassleriana HOM05D001478 ORTHO05D002240 2.2e-24 115.9 143 51.0
BcaB03g12191 Brassica carinata HOM05D001478 ORTHO05D002240 2.3e-21 105.9 128 53.1
C03p76340 Brassica napus HOM05D001478 ORTHO05D002240 5.1e-21 104.8 132 50.0
BolC3t19891H Brassica oleracea HOM05D001478 ORTHO05D002240 5.1e-21 104.8 132 50.0
BraA08t34428Z Brassica rapa HOM05D001478 ORTHO05D002240 5.1e-21 104.8 131 50.4
A08p24740 Brassica napus HOM05D001478 ORTHO05D002240 1.1e-20 103.6 135 48.9
BcaC01g00152 Brassica carinata HOM05D001478 ORTHO05D002240 3.7e-19 98.6 134 48.5
Ciclev10011688m.g Citrus clementina HOM05D001478 ORTHO05D002240 1.1e-18 97.1 151 42.4
Manes.09G121300 Manihot esculenta HOM05D001478 ORTHO05D002240 3.1e-18 95.5 164 42.1
Eucgr.A00820 Eucalyptus grandis HOM05D001478 ORTHO05D002240 1.5e-17 93.2 153 43.1
THA.LOC104806258 Tarenaya hassleriana HOM05D001478 ORTHO05D002240 7.6e-17 90.9 138 47.1
Potri.006G111900 Populus trichocarpa HOM05D001478 ORTHO05D002240 1.0e-16 90.5 155 43.2
Cpa.g.sc0.61 Carica papaya HOM05D001478 ORTHO05D002240 6.5e-16 87.8 157 40.1
Sabra06G0087200 Salix brachista HOM05D001478 ORTHO05D002240 6.5e-16 87.8 155 42.6
Potri.016G141300 Populus trichocarpa HOM05D001478 ORTHO05D002240 1.1e-15 87.0 155 41.9
Sabra04G0157700 Salix brachista HOM05D001478 ORTHO05D002240 1.9e-15 86.3 155 41.9
Cfa016996 Carpinus fangiana HOM05D001478 ORTHO05D002240 2.5e-15 85.9 160 40.6
MD04G1178200 Malus domestica HOM05D001478 ORTHO05D002240 3.2e-15 85.5 149 42.3
MD12G1193800 Malus domestica HOM05D001478 ORTHO05D002240 7.2e-15 84.3 151 43.7
PGR031G0542 Punica granatum HOM05D001478 ORTHO05D002240 7.2e-15 84.3 152 42.1
Gohir.A03G087200 Gossypium hirsutum HOM05D001478 ORTHO05D002240 9.4e-15 84.0 163 38.0
Gohir.D02G001300 Gossypium hirsutum HOM05D001478 ORTHO05D002240 1.6e-14 83.2 152 40.8
Gohir.A02G001000 Gossypium hirsutum HOM05D001478 ORTHO05D002240 2.1e-14 82.8 152 40.8
COL.COLO4_06160 Corchorus olitorius HOM05D001478 ORTHO05D002240 6.1e-14 81.3 158 39.9
Duzib151G0381 Durio zibethinus HOM05D001478 ORTHO05D002240 1.4e-13 80.1 165 37.0
Gorai.005G001800 Gossypium raimondii HOM05D001478 ORTHO05D002240 1.4e-13 80.1 153 39.2
Gorai.005G129000 Gossypium raimondii HOM05D001478 ORTHO05D002240 1.4e-13 80.1 163 36.8
Medtr7g074150 Medicago truncatula HOM05D001478 ORTHO05D002240 1.4e-13 80.1 157 37.6
TWI53G1359 Tripterygium wilfordii HOM05D001478 ORTHO05D002240 1.4e-13 80.1 159 37.1
Duzib212G0118 Durio zibethinus HOM05D001478 ORTHO05D002240 1.8e-13 79.7 165 38.2
Thecc.04G146500 Theobroma cacao HOM05D001478 ORTHO05D002240 2.3e-13 79.3 164 39.0
Glyma.09G271300 Glycine max HOM05D001478 ORTHO05D002240 3.9e-13 78.6 165 36.4
Carub.0024s0007 Capsella rubella HOM05D001478 ORTHO05D002240 5.1e-13 78.2 149 38.3
AT5G01970 Arabidopsis thaliana HOM05D001478 ORTHO05D002240 8.8e-13 77.4 151 38.4
Sp6g41210 Schrenkiella parvula HOM05D001478 ORTHO05D002240 8.8e-13 77.4 151 38.4
AL6G10060 Arabidopsis lyrata HOM05D001478 ORTHO05D002240 1.1e-12 77.0 149 37.6
CiPaw.09G223700 Carya illinoinensis HOM05D001478 ORTHO05D002240 1.1e-12 77.0 161 38.5
TWI74G1626 Tripterygium wilfordii HOM05D001478 ORTHO05D002240 1.9e-12 76.3 102 47.1
CsaV3_4G027430 Cucumis sativus L. HOM05D001478 ORTHO05D002240 2.5e-12 75.9 156 39.7
MELO3C025262.2 Cucumis melo HOM05D001478 ORTHO05D002240 4.3e-12 75.1 162 40.1
Prupe.6G298200 Prunus persica HOM05D001478 ORTHO05D002240 4.3e-12 75.1 147 39.5
Actinidia11479 Actinidia chinensis HOM05D001478 ORTHO05D002240 5.7e-12 74.7 166 35.5
Rhsim05G0233800 Rhododendron simsii HOM05D001478 ORTHO05D002240 5.7e-12 74.7 163 36.2
Thhalv10013951m.g Eutrema salsugineum HOM05D001478 ORTHO05D002240 7.4e-12 74.3 149 36.9
Phvul.008G078800 Phaseolus vulgaris HOM05D001478 ORTHO05D002240 7.4e-12 74.3 163 35.0
Dinv25370 Davidia involucrata HOM05D001478 ORTHO05D002240 9.7e-12 73.9 165 36.4
Glyma.18G218000 Glycine max HOM05D001478 ORTHO05D002240 9.7e-12 73.9 165 33.9
MSTRG.18926 Avicennia marina HOM05D001478 ORTHO05D002240 1.3e-11 73.6 151 36.4
CSS0001206 Camellia sinensis var. sinensis HOM05D001478 ORTHO05D002240 1.3e-11 73.6 169 36.7
CSS0028731 Camellia sinensis var. sinensis HOM05D001478 ORTHO05D002240 1.3e-11 73.6 169 36.7
Actinidia29008 Actinidia chinensis HOM05D001478 ORTHO05D002240 1.7e-11 73.2 167 34.7
ClCG04G006130 Citrullus lanatus HOM05D001478 ORTHO05D002240 1.7e-11 73.2 154 40.3
QL07p031371 Quercus lobata HOM05D001478 ORTHO05D002240 1.7e-11 73.2 164 36.6
vmacro20396 Vaccinium macrocarpon HOM05D001478 ORTHO05D002240 1.7e-11 73.2 163 36.2
Migut.L02049 Erythranthe guttata HOM05D001478 ORTHO05D002240 2.2e-11 72.8 149 35.6
Hma1.2p1_0174F.1_g076590 Hydrangea macrophylla HOM05D001478 ORTHO05D002240 2.2e-11 72.8 177 32.8
Lalb_Chr19g0123891 Lupinus albus HOM05D001478 ORTHO05D002240 2.2e-11 72.8 152 38.8
Nitab4.5_0004009g0030 Nicotiana tabacum HOM05D001478 ORTHO05D002240 2.2e-11 72.8 141 37.6
TPR.G24317 Trifolium pratense HOM05D001478 ORTHO05D002240 2.8e-11 72.4 149 38.3
Dinv16936 Davidia involucrata HOM05D001478 ORTHO05D002240 3.7e-11 72.0 165 36.4
Psat3g117760 Pisum sativum HOM05D001478 ORTHO05D002240 3.7e-11 72.0 157 37.6
RcHm_v2.0_Chr3g0459761 Rosa chinensis HOM05D001478 ORTHO05D002240 3.7e-11 72.0 147 38.1
AUR62006453 Chenopodium quinoa HOM05D001478 ORTHO05D002240 4.8e-11 71.6 159 37.7
AUR62029805 Chenopodium quinoa HOM05D001478 ORTHO05D002240 6.3e-11 71.2 169 34.9
FAN09G0473 Fragaria x ananassa HOM05D001478 ORTHO05D002240 6.3e-11 71.2 161 34.8
Oeu039291.1 Olea europaea HOM05D001478 ORTHO05D002240 8.2e-11 70.9 161 33.5
Haze_21208 Corylus avellana HOM05D001478 ORTHO05D002240 1.4e-10 70.1 99 46.5
FvH4_6g09370 Fragaria vesca HOM05D001478 ORTHO05D002240 1.4e-10 70.1 155 35.5
FAN02G0196 Fragaria x ananassa HOM05D001478 ORTHO05D002240 1.4e-10 70.1 155 35.5
FAN05G1623 Fragaria x ananassa HOM05D001478 ORTHO05D002240 1.4e-10 70.1 155 35.5
FAN14G0581 Fragaria x ananassa HOM05D001478 ORTHO05D002240 1.4e-10 70.1 155 35.5
Cc06_g00170 Coffea canephora HOM05D001478 ORTHO05D002240 1.8e-10 69.7 160 35.6
CANSAT11G0070 Cannabis sativa HOM05D001478 ORTHO05D002240 5.3e-10 68.2 167 34.1
CANSAT11G1468 Cannabis sativa HOM05D001478 ORTHO05D002240 5.3e-10 68.2 167 34.1
Ca_07796_v3 Cicer arietinum L. HOM05D001478 ORTHO05D002240 6.9e-10 67.8 160 35.6
VMungo1383G3634 Vigna mungo HOM05D001478 ORTHO05D002240 6.9e-10 67.8 163 33.1
Lj1g0012332 Lotus japonicus HOM05D001478 ORTHO05D002240 1.5e-09 66.6 94 47.9
Sed0022486 Sechium edule HOM05D001478 ORTHO05D002240 1.5e-09 66.6 150 40.0
TAR633G0327 Trochodendron aralioides HOM05D001478 ORTHO05D002240 2.6e-09 65.9 155 35.5
Hund03684 Selenicereus undatus HOM05D001478 ORTHO05D002240 3.4e-09 65.5 166 37.3
CSS0025074 Camellia sinensis var. sinensis HOM05D001478 ORTHO05D002240 4.5e-09 65.1 154 36.4
MBI15_g31030_MAGBIO Magnolia biondii HOM05D001478 ORTHO05D002240 4.5e-09 65.1 155 35.5
CSS0005926 Camellia sinensis var. sinensis HOM05D001478 ORTHO05D002240 5.9e-09 64.7 154 35.7
Ca_28099_v3 Cicer arietinum L. HOM05D001478 ORTHO05D002240 7.7e-09 64.3 160 34.4
Lj2A56T89 Lonicera japonica HOM05D001478 ORTHO05D002240 7.7e-09 64.3 158 35.4
HanXRQChr15g0464541 Helianthus annuus HOM05D001478 ORTHO05D002240 1.0e-08 63.9 161 32.9
BcaC06g35489 Brassica carinata HOM05D001478 ORTHO05D002240 1.3e-08 63.5 64 62.5
Lsat_1_v5_gn_9_39801 Lactuca sativa HOM05D001478 ORTHO05D002240 1.3e-08 63.5 167 34.7
DCAR_015323 Daucus carota HOM05D001478 ORTHO05D002240 2.2e-08 62.8 163 33.7
HanXRQChr10g0286191 Helianthus annuus HOM05D001478 ORTHO05D002240 2.2e-08 62.8 156 34.0
Aqoxy4G03312 Aquilegia oxysepala HOM05D001478 ORTHO05D002240 3.8e-08 62.0 152 34.9
ECA247G1310 Erigeron canadensis HOM05D001478 ORTHO05D000857 3.8e-08 62.0 159 34.6
EL10Ac7g17141 Beta vulgaris HOM05D001478 ORTHO05D002240 5.0e-08 61.6 167 37.1
Atru.chr8.59 Acer truncatum HOM05D001478 ORTHO05D002240 1.1e-07 60.5 162 32.1
GSVIVG01029860001 Vitis vinifera HOM05D001478 ORTHO05D002240 1.4e-07 60.1 100 43.0
Ah.15g089790 Amaranthus hybridus HOM05D001478 ORTHO05D002240 2.5e-07 59.3 174 33.3
Aa31LG5G11320 Aethionema arabicum HOM05D001478 ORTHO05D002240 3.2e-07 58.9 175 29.7
CiPaw.14G048800 Carya illinoinensis HOM05D001478 ORTHO05D002240 5.5e-07 58.2 156 33.3
ATR1127G080 Amborella trichopoda HOM05D001478 ORTHO05D002240 1.6e-06 56.6 167 30.5
Lsat_1_v5_gn_9_15381 Lactuca sativa HOM05D001478 ORTHO05D002240 1.6e-06 56.6 151 34.4
Phvul.006G081100 Phaseolus vulgaris HOM05D001478 ORTHO05D002240 2.7e-06 55.8 159 32.1
Sc20g0007280 Simmondsia chinensis HOM05D001478 ORTHO05D002240 2.7e-06 55.8 167 30.5
Sc20g0007590 Simmondsia chinensis HOM05D001478 ORTHO05D002240 2.7e-06 55.8 167 30.5
BcaB01g04091 Brassica carinata HOM05D001478 ORTHO05D002240 4.7e-06 55.1 136 38.2
unitig_52.g16840 Utricularia gibba HOM05D001478 ORTHO05D002240 4.7e-06 55.1 160 31.9


User provided reference genes

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