Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.5e-33 145.6 72 100.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.5e-33 145.6 72 100.0
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.1e-31 139.4 73 97.3
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 5.3e-31 137.1 74 94.6
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 6.5e-29 130.2 73 90.4
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.4e-28 129.0 72 90.3
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 7.1e-28 126.7 73 89.0
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 9.3e-28 126.3 73 89.0
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 9.3e-28 126.3 73 89.0
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 2.1e-27 125.2 73 87.7
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.7e-27 124.8 73 87.7
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.7e-27 124.8 73 87.7
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 3.5e-27 124.4 72 87.5
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 6.0e-27 123.6 73 87.7
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 5.1e-26 120.6 72 84.7
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 7.4e-25 116.7 72 83.3
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.8e-23 112.1 72 77.8
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 4.5e-22 107.5 72 72.2
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.8e-21 104.4 72 72.2
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.9e-20 102.1 72 68.1
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 2.5e-20 101.7 66 71.2
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 7.1e-20 100.1 73 67.1
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.6e-19 97.4 72 66.7
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 7.9e-19 96.7 76 63.2
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.3e-18 95.9 75 70.7
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.3e-18 95.9 74 67.6
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.8e-18 95.5 74 67.6
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.8e-18 95.5 70 64.3
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 2.3e-18 95.1 72 65.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.0e-18 94.7 65 73.8
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 6.7e-18 93.6 72 65.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 6.7e-18 93.6 72 65.3
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.1e-17 92.8 72 63.9
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.9e-17 92.0 72 61.1
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 3.3e-17 91.3 77 61.0
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 4.3e-17 90.9 74 63.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 4.3e-17 90.9 72 65.3
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 9.7e-17 89.7 71 62.0
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.6e-16 89.0 49 83.7
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.6e-16 89.0 62 71.0
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 2.8e-16 88.2 78 62.8
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 3.7e-16 87.8 72 62.5
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 6.3e-16 87.0 71 63.4
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.3e-16 87.0 65 64.6
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 6.3e-16 87.0 72 61.1
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.1e-15 86.3 75 61.3
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 1.1e-15 86.3 76 59.2
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.1e-15 86.3 65 64.6
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.4e-15 85.9 65 64.6
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.4e-15 85.9 58 69.0
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.4e-15 85.9 78 60.3
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.8e-15 85.5 74 58.1
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.8e-15 85.5 72 58.3
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.4e-15 85.1 72 58.3
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.4e-15 85.1 72 58.3
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 2.4e-15 85.1 73 58.9
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 3.1e-15 84.7 49 79.6
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 3.1e-15 84.7 70 55.7
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 5.3e-15 84.0 68 61.8
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 5.3e-15 84.0 72 56.9
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 6.9e-15 83.6 73 65.8
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 6.9e-15 83.6 73 65.8
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 3.4e-14 81.3 46 78.3
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.4e-14 81.3 65 60.0
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 4.5e-14 80.9 69 58.0
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 7.7e-14 80.1 73 63.0
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 7.7e-14 80.1 55 63.6
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 1.3e-13 79.3 65 58.5
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.9e-13 78.2 56 62.5
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.9e-13 78.2 73 54.8
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 8.5e-13 76.6 75 58.7
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 9.4e-12 73.2 49 75.5
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.2e-11 72.8 49 69.4
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 3.6e-11 71.2 69 56.5
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 4.6e-11 70.9 73 56.2
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 6.1e-11 70.5 53 60.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 7.9e-11 70.1 68 54.4
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 7.9e-11 70.1 66 50.0
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 3.9e-10 67.8 67 56.7
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 8.8e-10 66.6 40 67.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 1.1e-07 59.7 68 47.1
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 3.1e-07 58.2 50 62.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 5.3e-07 57.4 50 60.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 6.9e-07 57.0 56 46.4
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 9.1e-07 56.6 50 60.0
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 2.0e-06 55.5 55 50.9
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 2.6e-06 55.1 50 60.0
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 3.4e-06 54.7 54 50.0


User provided reference genes

Program Settings