Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13749 Brassica carinata HOM05D000317 ORTHO05D000032 2.8e-64 248.4 126 100.0
Thhalv10007844m.g Eutrema salsugineum HOM05D000317 ORTHO05D000032 1.7e-61 239.2 126 96.0
A05p25090 Brassica napus HOM05D000317 ORTHO05D000032 3.8e-61 238.0 126 96.0
AL1G46380 Arabidopsis lyrata HOM05D000317 ORTHO05D000032 6.6e-61 237.3 126 95.2
AT1G32240 Arabidopsis thaliana HOM05D000317 ORTHO05D000032 6.6e-61 237.3 126 95.2
BcaC05g27898 Brassica carinata HOM05D000317 ORTHO05D000032 1.5e-60 236.1 126 95.2
C05p39050 Brassica napus HOM05D000317 ORTHO05D000032 1.5e-60 236.1 126 95.2
BolC5t32642H Brassica oleracea HOM05D000317 ORTHO05D000032 1.5e-60 236.1 126 95.2
BraA05t21391Z Brassica rapa HOM05D000317 ORTHO05D000032 1.9e-60 235.7 126 95.2
Sp1g27920 Schrenkiella parvula HOM05D000317 ORTHO05D000032 9.5e-60 233.4 126 94.4
Carub.0001s3057 Capsella rubella HOM05D000317 ORTHO05D000032 6.1e-59 230.7 127 93.7
CARHR031610 Cardamine hirsuta HOM05D000317 ORTHO05D000032 2.3e-58 228.8 126 91.3
BolC5t31895H Brassica oleracea HOM05D000317 ORTHO05D000032 2.4e-55 218.8 122 91.8
A09p33900 Brassica napus HOM05D000317 ORTHO05D000032 3.2e-55 218.4 122 90.2
BraA09t38937Z Brassica rapa HOM05D000317 ORTHO05D000032 3.2e-55 218.4 122 90.2
Aa31LG2G13760 Aethionema arabicum HOM05D000317 ORTHO05D000032 5.4e-55 217.6 127 87.4
BcaB07g32904 Brassica carinata HOM05D000317 ORTHO05D000032 7.0e-55 217.2 122 90.2
C05p31700 Brassica napus HOM05D000317 ORTHO05D000032 1.2e-54 216.5 122 91.0
BcaC07g37626 Brassica carinata HOM05D000317 ORTHO05D000032 4.6e-54 214.5 122 88.5
BolC8t47995H Brassica oleracea HOM05D000317 ORTHO05D000032 4.6e-54 214.5 122 88.5
BcaC05g27897 Brassica carinata HOM05D000317 ORTHO05D000032 1.0e-50 203.4 112 92.9
THA.LOC104798490 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.9e-36 156.0 131 70.2
THA.LOC104812758 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 7.8e-30 134.0 124 66.1
THA.LOC104814418 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 7.8e-30 134.0 133 63.2
GSVIVG01013085001 Vitis vinifera HOM05D000317 ORTHO05D000032 2.4e-26 122.5 132 62.1
COL.COLO4_16948 Corchorus olitorius HOM05D000317 ORTHO05D000032 3.1e-26 122.1 135 58.5
Thecc.03G309600 Theobroma cacao HOM05D000317 ORTHO05D000032 5.2e-26 121.3 135 58.5
Ciclev10001292m.g Citrus clementina HOM05D000317 ORTHO05D000032 1.5e-25 119.8 128 59.4
Cc08_g03280 Coffea canephora HOM05D000317 ORTHO05D000032 9.9e-25 117.1 134 56.0
Manes.17G010300 Manihot esculenta HOM05D000317 ORTHO05D000032 9.9e-25 117.1 135 57.8
Duzib068G0674 Durio zibethinus HOM05D000317 ORTHO05D000032 3.8e-24 115.2 137 55.5
Psat2g138760 Pisum sativum HOM05D000317 ORTHO05D000032 4.9e-24 114.8 134 55.2
CSS0021269 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 6.4e-24 114.4 128 60.2
Dinv28999 Davidia involucrata HOM05D000317 ORTHO05D000032 6.4e-24 114.4 130 59.2
Glyma.09G207300 Glycine max HOM05D000317 ORTHO05D000032 8.4e-24 114.0 133 56.4
Medtr5g029470 Medicago truncatula HOM05D000317 ORTHO05D000032 8.4e-24 114.0 134 55.2
TPR.G19428 Trifolium pratense HOM05D000317 ORTHO05D000032 1.4e-23 113.2 134 55.2
Gorai.008G224400 Gossypium raimondii HOM05D000317 ORTHO05D000032 4.2e-23 111.7 134 53.7
Lalb_Chr16g0381111 Lupinus albus HOM05D000317 ORTHO05D000032 4.2e-23 111.7 133 57.9
Lj2g0009365 Lotus japonicus HOM05D000317 ORTHO05D000032 7.1e-23 110.9 132 53.8
Cpa.g.sc208.13 Carica papaya HOM05D000317 ORTHO05D000032 9.3e-23 110.5 127 55.9
Gohir.A08G153966 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.2e-22 110.2 136 53.7
Dinv25254 Davidia involucrata HOM05D000317 ORTHO05D000032 1.6e-22 109.8 140 50.0
Gohir.A12G206500 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.6e-22 109.8 133 53.4
Gohir.D12G208900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.6e-22 109.8 133 53.4
Cfa012523 Carpinus fangiana HOM05D000317 ORTHO05D000032 2.1e-22 109.4 131 58.8
Hma1.2p1_1027F.1_g249500 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 2.1e-22 109.4 129 55.0
arahy.Tifrunner.gnm1.ann1.6E07G6 Arachis hypogaea HOM05D000317 ORTHO05D000032 2.7e-22 109.0 141 51.8
arahy.Tifrunner.gnm1.ann1.P7Z227 Arachis hypogaea HOM05D000317 ORTHO05D000032 2.7e-22 109.0 141 51.8
Lalb_Chr05g0215791 Lupinus albus HOM05D000317 ORTHO05D000032 2.7e-22 109.0 133 56.4
Gohir.D08G174900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 3.5e-22 108.6 136 52.9
Gorai.004G182500 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.5e-22 108.6 136 52.9
BcaC05g27262 Brassica carinata HOM05D000317 ORTHO05D000032 4.6e-22 108.2 62 88.7
Rhsim11G0020700 Rhododendron simsii HOM05D000317 ORTHO05D000032 6.0e-22 107.8 133 52.6
Potri.003G096300 Populus trichocarpa HOM05D000317 ORTHO05D000032 7.8e-22 107.5 133 51.1
Ah.12g055460 Amaranthus hybridus HOM05D000317 ORTHO05D000032 1.0e-21 107.1 140 52.1
CiPaw.11G098000 Carya illinoinensis HOM05D000317 ORTHO05D000032 1.0e-21 107.1 130 56.2
QL12p001426 Quercus lobata HOM05D000317 ORTHO05D000032 1.0e-21 107.1 130 57.7
TWI81G0528 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 1.0e-21 107.1 131 55.0
VMungo1215G1741 Vigna mungo HOM05D000317 ORTHO05D000032 1.3e-21 106.7 134 56.7
Atru.chr6.1515 Acer truncatum HOM05D000317 ORTHO05D000032 1.7e-21 106.3 140 52.9
CiPaw.12G067800 Carya illinoinensis HOM05D000317 ORTHO05D000032 2.3e-21 105.9 132 55.3
Ca_25184_v3 Cicer arietinum L. HOM05D000317 ORTHO05D000032 3.0e-21 105.5 133 54.9
Phvul.002G137300 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 3.0e-21 105.5 133 54.1
Duzib084G1359 Durio zibethinus HOM05D000317 ORTHO05D000032 3.9e-21 105.1 131 52.7
Duzib205G0608 Durio zibethinus HOM05D000317 ORTHO05D000032 8.7e-21 104.0 137 53.3
MD16G1279800 Malus domestica HOM05D000317 ORTHO05D000032 8.7e-21 104.0 149 50.3
MD06G1026200 Malus domestica HOM05D000317 ORTHO05D000032 1.9e-20 102.8 149 50.3
Peaxi162Scf00185g00095 Petunia axillaris HOM05D000317 ORTHO05D000032 1.9e-20 102.8 138 50.7
TWI60G1722 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 1.9e-20 102.8 134 55.2
Lalb_Chr09g0325511 Lupinus albus HOM05D000317 ORTHO05D000032 2.5e-20 102.4 125 54.4
AUR62018645 Chenopodium quinoa HOM05D000317 ORTHO05D000032 3.3e-20 102.1 142 52.8
Medtr8g066310 Medicago truncatula HOM05D000317 ORTHO05D000032 4.3e-20 101.7 137 49.6
Sc01g0007180 Simmondsia chinensis HOM05D000317 ORTHO05D000032 4.3e-20 101.7 144 49.3
Manes.15G185500 Manihot esculenta HOM05D000317 ORTHO05D000032 5.6e-20 101.3 134 51.5
AUR62007349 Chenopodium quinoa HOM05D000317 ORTHO05D000032 9.6e-20 100.5 140 52.9
Lsat_1_v5_gn_3_18021 Lactuca sativa HOM05D000317 ORTHO05D000032 9.6e-20 100.5 136 50.7
MSTRG.12174 Avicennia marina HOM05D000317 ORTHO05D000032 2.1e-19 99.4 131 48.1
Peaxi162Scf00045g00221 Petunia axillaris HOM05D000317 ORTHO05D000032 2.1e-19 99.4 137 53.3
Sabra01G0106200 Salix brachista HOM05D000317 ORTHO05D000032 2.1e-19 99.4 135 54.8
MELO3C003436.2 Cucumis melo HOM05D000317 ORTHO05D000032 6.2e-19 97.8 137 48.2
CAN.G474.20 Capsicum annuum HOM05D000317 ORTHO05D000032 8.1e-19 97.4 145 51.0
CsaV3_3G048880 Cucumis sativus L. HOM05D000317 ORTHO05D000032 8.1e-19 97.4 137 47.4
Potri.001G137600 Populus trichocarpa HOM05D000317 ORTHO05D000032 8.1e-19 97.4 133 52.6
ClCG09G011660 Citrullus lanatus HOM05D000317 ORTHO05D000032 1.1e-18 97.1 136 46.3
Nitab4.5_0001632g0010 Nicotiana tabacum HOM05D000317 ORTHO05D000032 2.4e-18 95.9 135 53.3
Prupe.5G028400 Prunus persica HOM05D000317 ORTHO05D000032 2.4e-18 95.9 145 51.7
FAN18G4490 Fragaria x ananassa HOM05D000317 ORTHO05D000032 3.1e-18 95.5 136 53.7
PGR042G2955 Punica granatum HOM05D000317 ORTHO05D000032 3.1e-18 95.5 135 48.9
CSS0001412 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 5.3e-18 94.7 130 53.1
Eucgr.E00234 Eucalyptus grandis HOM05D000317 ORTHO05D000032 9.0e-18 94.0 129 50.4
Nitab4.5_0000109g0060 Nicotiana tabacum HOM05D000317 ORTHO05D000032 1.2e-17 93.6 141 51.1
Solyc08g005260.2 Solanum lycopersicum HOM05D000317 ORTHO05D000032 1.2e-17 93.6 134 49.3
Sopen06g021670 Solanum pennellii HOM05D000317 ORTHO05D000032 1.2e-17 93.6 139 50.4
Sopen08g001280 Solanum pennellii HOM05D000317 ORTHO05D000032 1.2e-17 93.6 134 49.3
DCAR_004273 Daucus carota HOM05D000317 ORTHO05D000032 2.0e-17 92.8 146 52.1
HanXRQChr06g0172741 Helianthus annuus HOM05D000317 ORTHO05D000032 2.0e-17 92.8 136 47.8
PSO063G4639 Papaver somniferum HOM05D000317 ORTHO05D000032 2.0e-17 92.8 135 49.6
PSO782G1527 Papaver somniferum HOM05D000317 ORTHO05D000032 2.0e-17 92.8 135 49.6
TPR.G3355 Trifolium pratense HOM05D000317 ORTHO05D000032 2.0e-17 92.8 139 50.4
FAN08G2613 Fragaria x ananassa HOM05D000317 ORTHO05D000032 2.6e-17 92.4 139 52.5
Nn3g19401 Nelumbo nucifera HOM05D000317 ORTHO05D000032 2.6e-17 92.4 127 50.4
TAR374G0494 Trochodendron aralioides HOM05D000317 ORTHO05D000032 2.6e-17 92.4 132 46.2
FAN18G1634 Fragaria x ananassa HOM05D000317 ORTHO05D000032 4.4e-17 91.7 137 53.3
Hund11189 Selenicereus undatus HOM05D000317 ORTHO05D000032 5.8e-17 91.3 144 47.9
PGSC0003DMG400016767 Solanum tuberosum HOM05D000317 ORTHO05D000032 5.8e-17 91.3 140 49.3
FAN04G1143 Fragaria x ananassa HOM05D000317 ORTHO05D000032 9.9e-17 90.5 138 50.0
HanXRQChr13g0415631 Helianthus annuus HOM05D000317 ORTHO05D000032 9.9e-17 90.5 133 49.6
Hma1.2p1_0870F.1_g230865 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 1.3e-16 90.1 135 49.6
Sed0022531 Sechium edule HOM05D000317 ORTHO05D000032 1.3e-16 90.1 133 45.9
TAR375G0136 Trochodendron aralioides HOM05D000317 ORTHO05D000032 1.3e-16 90.1 135 46.7
ECA246G0064 Erigeron canadensis HOM05D000317 ORTHO05D000032 1.7e-16 89.7 136 52.2
Glyma.01G014800 Glycine max HOM05D000317 ORTHO05D000032 1.7e-16 89.7 126 50.8
VMungo0251G0631 Vigna mungo HOM05D000317 ORTHO05D000032 1.7e-16 89.7 133 52.6
Solyc06g066340.4 Solanum lycopersicum HOM05D000317 ORTHO05D000032 2.9e-16 89.0 140 49.3
SGA_v2.0_scaffold36G14299 Striga asiatica HOM05D000317 ORTHO05D000032 4.9e-16 88.2 132 49.2
Aqoxy3G02188 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 6.4e-16 87.8 136 50.7
FAN13G3098 Fragaria x ananassa HOM05D000317 ORTHO05D000032 1.1e-15 87.0 136 51.5
Nn1g00197 Nelumbo nucifera HOM05D000317 ORTHO05D000032 2.4e-15 85.9 133 48.1
CAN.G137.8 Capsicum annuum HOM05D000317 ORTHO05D000032 3.2e-15 85.5 127 43.3
MSTRG.13738 Avicennia marina HOM05D000317 ORTHO05D000032 5.4e-15 84.7 131 47.3
HanXRQChr17g0538151 Helianthus annuus HOM05D000317 ORTHO05D000032 5.4e-15 84.7 132 46.2
PGSC0003DMG400018472 Solanum tuberosum HOM05D000317 ORTHO05D000032 5.4e-15 84.7 135 46.7
Hund14566 Selenicereus undatus HOM05D000317 ORTHO05D000032 1.6e-14 83.2 158 46.8
TAR629G0315 Trochodendron aralioides HOM05D000317 ORTHO05D000032 1.6e-14 83.2 134 46.3
Lsat_1_v5_gn_6_3581 Lactuca sativa HOM05D000317 ORTHO05D000032 6.0e-14 81.3 131 45.0
Actinidia14782 Actinidia chinensis HOM05D000317 ORTHO05D000032 1.0e-13 80.5 130 50.8
Phvul.003G283000 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 1.0e-13 80.5 128 48.4
Eucgr.D02225 Eucalyptus grandis HOM05D000317 ORTHO05D000032 1.7e-13 79.7 133 46.6
SGA_v2.0_scaffold198G41076 Striga asiatica HOM05D000317 ORTHO05D000032 1.7e-13 79.7 125 46.4
Actinidia01321 Actinidia chinensis HOM05D000317 ORTHO05D000032 3.0e-13 79.0 106 47.2
CsaV3_3G001390 Cucumis sativus L. HOM05D000317 ORTHO05D000032 5.1e-13 78.2 150 44.0
ECA233G5042 Erigeron canadensis HOM05D000317 ORTHO05D000032 8.7e-13 77.4 137 42.3
Sed0026002 Sechium edule HOM05D000317 ORTHO05D000032 1.1e-12 77.0 133 45.1
ClCG10G001320 Citrullus lanatus HOM05D000317 ORTHO05D000032 1.5e-12 76.6 155 40.6
SHI07422 Sapria himalayana HOM05D000317 ORTHO05D000032 1.9e-12 76.3 129 41.1
Sabra03G0065000 Salix brachista HOM05D000317 ORTHO05D000032 4.3e-12 75.1 193 32.1
Sp7g16440 Schrenkiella parvula HOM05D000317 ORTHO05D000032 7.4e-12 74.3 123 43.9
Thhalv10026166m.g Eutrema salsugineum HOM05D000317 ORTHO05D000032 2.8e-11 72.4 123 40.7
Gohir.A08G154032 Gossypium hirsutum HOM05D000317 ORTHO05D000032 2.8e-11 72.4 99 48.5
BolC8t48511H Brassica oleracea HOM05D000317 ORTHO05D000032 1.4e-10 70.1 123 40.7
A01p09780 Brassica napus HOM05D000317 ORTHO05D000032 4.0e-10 68.6 125 40.8
Rhsim07G0131500 Rhododendron simsii HOM05D000317 ORTHO05D000032 4.0e-10 68.6 126 44.4
BraA01t00921Z Brassica rapa HOM05D000317 ORTHO05D000032 9.0e-10 67.4 125 40.0
C01p11400 Brassica napus HOM05D000317 ORTHO05D000032 1.2e-09 67.0 125 40.0
CDE06G2056 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 1.2e-09 67.0 126 42.9
THA.LOC104811356 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.2e-09 67.0 73 60.3
Actinidia18127 Actinidia chinensis HOM05D000317 ORTHO05D000032 1.5e-09 66.6 131 44.3
Lsat_1_v5_gn_6_81281 Lactuca sativa HOM05D000317 ORTHO05D000032 1.5e-09 66.6 133 42.9
BcaC09g51617 Brassica carinata HOM05D000317 ORTHO05D000032 2.0e-09 66.2 125 40.0
A08p13290 Brassica napus HOM05D000317 ORTHO05D000032 2.0e-09 66.2 123 39.8
CARHR224420 Cardamine hirsuta HOM05D000317 ORTHO05D000032 2.0e-09 66.2 125 42.4
FvH4_5g22990 Fragaria vesca HOM05D000317 ORTHO05D000032 2.0e-09 66.2 112 50.9
BolC1t01109H Brassica oleracea HOM05D000317 ORTHO05D000032 3.4e-09 65.5 123 39.0
CSS0047374 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 3.4e-09 65.5 69 62.3
Carub.0007s2368 Capsella rubella HOM05D000317 ORTHO05D000032 3.4e-09 65.5 126 42.1
RcHm_v2.0_Chr7g0211731 Rosa chinensis HOM05D000317 ORTHO05D000032 3.4e-09 65.5 116 42.2
BcaB04g18438 Brassica carinata HOM05D000317 ORTHO05D000032 9.9e-09 63.9 123 38.2
CDE11G1153 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 1.7e-08 63.2 134 38.8
Migut.E00748 Erythranthe guttata HOM05D000317 ORTHO05D000032 1.7e-08 63.2 83 49.4
PGR031G0812 Punica granatum HOM05D000317 ORTHO05D000032 1.7e-08 63.2 124 41.9
BraA08t33310Z Brassica rapa HOM05D000317 ORTHO05D000032 2.9e-08 62.4 123 39.0
CDE02G4480 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 2.9e-08 62.4 132 37.9
AL7G36890 Arabidopsis lyrata HOM05D000317 ORTHO05D000032 4.9e-08 61.6 124 41.9
HanXRQChr13g0396311 Helianthus annuus HOM05D000317 ORTHO05D000032 4.9e-08 61.6 132 40.9
Dinv17253 Davidia involucrata HOM05D000317 ORTHO05D000032 6.4e-08 61.2 129 41.9
BcaNung00066 Brassica carinata HOM05D000317 ORTHO05D000032 8.4e-08 60.8 128 39.1
ATR0829G065 Amborella trichopoda HOM05D000317 ORTHO05D000032 1.9e-07 59.7 124 38.7
GSVIVG01024383001 Vitis vinifera HOM05D000317 ORTHO05D000032 4.2e-07 58.5 134 41.8
Oeu027085.1 Olea europaea HOM05D000317 ORTHO05D000032 5.5e-07 58.2 64 53.1
vmacro00284 Vaccinium macrocarpon HOM05D000317 ORTHO05D000032 1.2e-06 57.0 70 52.9


User provided reference genes

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