Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 7.2e-107 390.6 196 100.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.6e-96 355.5 196 87.8
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.6e-96 355.5 196 87.8
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.4e-96 355.1 196 87.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 8.3e-95 350.5 191 91.1
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 8.3e-95 350.5 191 91.1
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 8.3e-95 350.5 191 91.1
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.0e-89 332.0 196 85.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.0e-89 332.0 196 85.7
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.6e-84 314.3 204 79.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.0e-82 307.4 204 80.9
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.8e-81 306.2 204 77.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.4e-73 280.0 206 75.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 9.8e-72 273.9 208 73.1
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.8e-65 253.1 209 70.8
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.3e-59 232.3 211 65.4
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-52 210.3 219 58.4
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.5e-51 206.1 209 59.3
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.8e-50 202.6 204 60.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.9e-47 192.6 207 57.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.1e-46 190.7 205 53.7
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.4e-46 189.5 215 57.2
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.1e-44 181.8 202 52.0
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-43 179.9 201 51.7
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-41 173.3 205 50.7
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.8e-41 173.3 205 50.7
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.8e-41 173.3 207 52.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 6.9e-41 171.4 209 52.2
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.4e-38 163.7 210 49.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.5e-35 152.9 227 45.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.3e-35 152.5 227 44.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.4e-35 151.4 204 47.5
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.8e-34 149.4 223 46.6
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.7e-34 149.1 229 44.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 3.1e-33 146.0 232 45.7
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-32 144.1 224 42.0
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 3.4e-32 142.5 224 42.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 7.6e-32 141.4 230 43.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-31 139.8 221 43.9
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 3.8e-31 139.0 209 45.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.4e-31 138.3 221 45.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.4e-31 138.3 221 45.2
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-30 137.5 237 43.0
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-30 137.5 237 43.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.6e-29 133.7 234 36.8
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.7e-29 132.9 230 43.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.5e-29 132.5 230 43.5
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.5e-29 132.5 230 43.5
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 6.0e-29 131.7 250 40.0
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 7.9e-29 131.3 237 40.1
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-28 130.6 224 41.1
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.3e-28 129.8 240 43.3
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.3e-28 129.8 233 39.5
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.0e-28 129.4 234 43.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 3.0e-28 129.4 234 43.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.9e-28 129.0 211 45.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 3.9e-28 129.0 224 42.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 3.9e-28 129.0 236 43.2
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 5.1e-28 128.6 224 42.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.7e-28 128.3 233 44.2
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.1e-27 127.5 222 39.2
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-27 127.1 224 41.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.3e-27 125.9 224 39.7
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 4.3e-27 125.6 197 45.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 7.4e-27 124.8 236 41.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.4e-27 124.8 228 36.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 7.4e-27 124.8 237 36.3
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 9.6e-27 124.4 223 39.9
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.1e-26 123.2 221 42.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.7e-26 122.5 232 40.9
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 6.2e-26 121.7 214 38.3
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.1e-25 120.9 233 39.1
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.8e-25 120.2 230 41.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.8e-25 120.2 242 39.7
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.4e-25 119.8 231 36.8
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 9.0e-25 117.9 244 38.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.2e-24 117.5 234 38.9
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.2e-24 117.5 224 39.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.0e-24 116.7 230 39.1
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 3.4e-24 115.9 201 37.3
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 5.8e-24 115.2 225 37.3
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 5.8e-24 115.2 231 39.0
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.8e-24 115.2 244 38.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.7e-23 113.6 241 37.3
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.5e-23 111.7 209 39.2
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.1e-22 110.9 233 36.9
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.1e-22 110.9 246 39.0
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.4e-22 110.5 201 39.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-22 110.2 225 35.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 3.2e-22 109.4 251 37.5
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.2e-22 109.4 241 36.9
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.2e-22 109.0 229 34.1
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.5e-22 108.6 219 38.4
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.5e-22 108.6 221 38.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 5.5e-22 108.6 246 35.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.5e-22 108.6 246 35.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.3e-22 107.8 246 35.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.2e-21 107.5 250 36.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-21 107.1 246 37.0
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-21 106.7 246 35.4
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.6e-21 105.5 234 34.6
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-20 104.4 216 35.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.0e-20 104.4 225 32.9
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 6.7e-20 101.7 237 38.0
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 8.7e-20 101.3 188 40.4
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.1e-19 100.9 244 38.1
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.5e-19 99.8 208 33.7
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.5e-19 99.8 220 40.0
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 5.7e-19 98.6 206 34.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.4e-19 98.2 206 35.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.4e-19 98.2 213 33.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.8e-18 96.3 229 31.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.4e-17 94.0 239 33.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.8e-17 93.6 201 34.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 3.1e-17 92.8 234 30.8
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.3e-17 92.0 166 41.6
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-16 90.1 223 33.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-15 87.8 226 34.1
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-15 87.4 138 42.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.2e-15 86.7 233 31.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.9e-15 86.3 220 31.8
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.4e-14 84.0 176 37.5
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.5e-14 83.2 266 32.0
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 9.4e-14 81.3 226 31.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 3.6e-13 79.3 238 33.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.9e-13 78.2 218 30.7
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.0e-12 77.8 188 36.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.8e-12 77.0 243 31.3
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 2.3e-12 76.6 155 35.5
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.3e-12 76.6 227 33.0
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 3.9e-12 75.9 223 32.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.7e-11 72.0 170 39.4
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 9.7e-11 71.2 103 45.6
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.8e-10 69.7 193 34.7
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.7e-10 69.3 136 33.8
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 6.3e-10 68.6 201 29.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.3e-10 68.6 185 34.1
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 6.3e-10 68.6 205 31.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 8.2e-10 68.2 103 36.9
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 8.2e-10 68.2 106 40.6
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.8e-09 67.0 140 35.0
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 7.7e-08 61.6 127 38.6
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.9e-07 59.7 111 38.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-06 57.4 98 38.8
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 7.2e-06 55.1 117 35.9


User provided reference genes

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