Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 2.7e-29 131.3 67 100.0
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 1.8e-25 118.6 67 91.0
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 1.8e-25 118.6 67 91.0
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 2.4e-25 118.2 67 89.6
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 2.4e-25 118.2 67 89.6
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 4.5e-24 114.0 68 89.7
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 4.5e-24 114.0 68 89.7
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 1.9e-22 108.6 68 86.8
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 1.9e-22 108.6 64 84.4
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 2.4e-22 108.2 65 80.0
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 3.2e-22 107.8 68 88.2
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 3.2e-22 107.8 68 88.2
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 4.2e-22 107.5 68 85.3
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 4.2e-22 107.5 68 86.8
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 7.9e-21 103.2 65 80.0
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 1.6e-18 95.5 58 86.2
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 4.9e-15 84.0 57 77.2
BcaNung04896 Brassica carinata HOM05D007891 ORTHO05D009992 9.3e-14 79.7 57 71.9
BolC8t47912H Brassica oleracea HOM05D007891 ORTHO05D009992 3.5e-13 77.8 57 70.2
Aa31LG6G7600 Aethionema arabicum HOM05D007891 ORTHO05D009992 4.6e-13 77.4 67 59.7
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 2.5e-11 71.6 48 70.8
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 1.8e-09 65.5 61 55.7
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 3.1e-09 64.7 59 52.5
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 3.1e-09 64.7 61 54.1
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 5.3e-09 63.9 62 54.8
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 6.9e-09 63.5 55 61.8
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.2e-08 62.8 61 54.1
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 1.2e-08 62.8 59 52.5
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 1.2e-08 62.8 60 53.3
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.5e-08 62.4 60 53.3
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.5e-08 62.4 59 57.6
A08p08750 Brassica napus HOM05D007891 ORTHO05D009992 2.6e-08 61.6 45 73.3
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.4e-08 61.2 59 55.9
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 7.6e-08 60.1 61 57.4
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.0e-07 59.7 59 55.9
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.7e-07 58.9 59 55.9
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.2e-07 58.5 59 54.2
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 4.9e-07 57.4 59 54.2
BraA08t32886Z Brassica rapa HOM05D007891 ORTHO05D009992 6.5e-07 57.0 40 75.0
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.5e-07 57.0 59 52.5
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 8.4e-07 56.6 61 47.5
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.1e-06 56.2 61 52.5
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 1.1e-06 56.2 57 47.4
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 1.1e-06 56.2 59 54.2
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 1.4e-06 55.8 50 56.0
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 1.4e-06 55.8 59 52.5
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 1.9e-06 55.5 59 49.2
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 1.9e-06 55.5 53 58.5
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 2.5e-06 55.1 67 47.8
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 4.2e-06 54.3 45 60.0
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 4.2e-06 54.3 52 51.9
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 7.1e-06 53.5 53 50.9
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 7.1e-06 53.5 45 57.8
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 7.1e-06 53.5 59 50.8
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 7.1e-06 53.5 59 50.8
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 7.1e-06 53.5 45 57.8


User provided reference genes

Program Settings