Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 7.7e-250 866.7 442 100.0
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.7e-226 788.5 442 90.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.7e-226 788.5 442 90.7
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.4e-222 776.2 443 89.4
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.3e-220 769.6 446 88.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.6e-216 754.2 464 85.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 4.3e-200 701.4 465 80.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.3e-200 700.7 464 80.4
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.3e-199 699.9 463 80.3
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.8e-199 698.7 460 81.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.9e-198 694.1 466 80.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 3.4e-181 638.6 464 73.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 3.8e-156 555.4 473 64.1
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 7.5e-128 461.5 473 56.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 7.5e-128 461.5 472 54.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.7e-127 459.1 473 56.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.4e-126 456.4 472 56.4
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.3e-121 439.9 466 55.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.9e-119 433.0 466 53.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-118 431.0 472 52.5
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.4e-118 429.9 453 56.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.4e-118 428.7 450 55.6
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.7e-116 423.7 488 51.6
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.8e-114 416.4 468 48.7
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 8.0e-114 414.8 492 50.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 4.4e-112 409.1 467 49.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 4.4e-112 409.1 461 50.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 7.5e-112 408.3 499 50.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 9.8e-112 407.9 485 51.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.9e-111 405.6 473 49.0
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.1e-110 404.4 469 51.6
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.4e-110 403.3 477 50.3
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.2e-110 402.9 466 50.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 3.2e-110 402.9 452 51.3
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.1e-110 402.5 472 48.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 7.1e-110 401.7 467 48.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.2e-109 401.0 475 50.1
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.1e-109 400.2 473 49.7
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-108 397.5 479 48.2
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.9e-108 396.0 491 50.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 6.6e-108 395.2 528 47.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 6.6e-108 395.2 506 47.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.6e-108 394.8 490 49.4
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.9e-107 393.7 461 49.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.6e-106 389.4 479 50.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 8.1e-106 388.3 450 51.8
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.1e-105 386.3 461 48.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.8e-105 385.2 478 48.1
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.5e-104 384.0 462 49.1
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.0e-104 383.6 502 48.2
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.6e-104 383.3 508 48.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.4e-104 382.9 451 50.3
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.4e-104 382.9 500 49.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.4e-104 382.5 518 46.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.4e-104 382.5 518 46.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 9.9e-104 381.3 485 47.8
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.3e-103 380.9 472 49.2
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.3e-103 380.9 526 45.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.9e-103 379.0 465 48.0
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 6.4e-103 378.6 470 49.4
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.9e-102 377.1 482 48.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 3.2e-102 376.3 479 50.5
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.2e-102 376.3 484 46.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.4e-102 375.6 465 48.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.1e-102 375.2 465 48.6
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.1e-102 375.2 465 48.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 9.2e-102 374.8 439 49.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.2e-102 374.8 464 48.3
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.0e-100 371.3 488 46.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.6e-100 368.6 518 44.0
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-99 367.9 474 47.7
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.1e-99 367.9 488 45.7
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.9e-99 367.1 483 46.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 9.6e-99 364.8 471 47.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-98 364.4 452 47.8
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.2e-98 364.4 487 46.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.6e-98 364.0 474 46.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 6.2e-98 362.1 469 46.1
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.4e-97 360.1 481 47.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.1e-97 359.8 503 44.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.8e-97 358.6 457 46.6
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.2e-96 357.8 464 47.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-96 357.8 504 44.8
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.4e-96 356.3 456 46.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 9.9e-96 354.8 392 50.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 4.9e-95 352.4 504 43.8
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.2e-94 349.7 402 49.5
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.2e-94 349.7 473 46.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.6e-93 347.4 337 56.7
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 6.0e-93 345.5 395 47.8
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 6.0e-93 345.5 395 47.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.3e-92 343.6 443 47.2
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.8e-90 336.7 457 44.9
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.6e-90 336.3 433 46.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.4e-89 333.6 399 49.4
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 9.9e-88 328.2 465 45.4
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.7e-87 327.4 496 43.3
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.2e-87 327.0 461 42.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 8.4e-87 325.1 384 54.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 7.1e-86 322.0 437 46.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.0e-85 318.9 417 47.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 8.7e-84 315.1 360 49.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.6e-83 312.4 446 42.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.8e-81 307.4 461 42.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 9.9e-80 301.6 457 42.7
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.4e-78 297.0 550 38.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.2e-78 296.2 456 41.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 5.4e-78 295.8 464 40.7
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.6e-77 294.3 460 42.6
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 4.3e-75 286.2 394 46.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.5e-72 276.2 429 40.1
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.0e-71 275.0 358 48.0
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.9e-71 272.7 465 39.6
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-67 261.5 391 40.7
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.3e-66 258.1 331 45.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.0e-64 250.8 461 37.5
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.2e-63 247.3 461 37.3
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 5.5e-62 242.7 482 36.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.0e-60 238.4 345 41.7
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.3e-59 233.0 464 38.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.5e-56 224.6 401 37.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 2.2e-55 220.7 446 36.8
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.3e-50 204.9 724 27.5
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.5e-39 166.0 211 48.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.5e-38 164.9 492 30.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.5e-38 164.9 205 46.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.9e-38 164.5 387 32.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.1e-37 161.0 636 25.9
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.5e-35 154.8 580 27.1
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.4e-35 153.3 204 43.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.7e-34 151.4 204 44.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.9e-32 142.9 572 26.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.6e-24 118.2 207 38.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.0e-23 115.5 513 25.7
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.5e-22 110.9 190 37.4
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 4.2e-22 110.2 207 37.2
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.5e-22 109.8 211 34.6
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 3.0e-20 104.0 192 36.5
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.2e-20 103.2 190 36.3
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.4e-19 100.5 315 27.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.4e-19 100.1 135 43.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.8e-18 97.4 191 37.7
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.1e-17 93.6 171 33.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 9.1e-17 92.4 199 31.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.2e-16 92.0 590 22.9
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.3e-15 87.8 87 49.4
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.3e-15 87.8 190 33.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 6.6e-15 86.3 69 55.1
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 8.6e-15 85.9 255 32.2
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.1e-13 79.7 153 39.2
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.0e-13 79.3 203 30.0
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 9.8e-11 72.4 105 47.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.3e-10 72.0 99 42.4
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.4e-09 67.8 110 46.4
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.2e-09 67.4 232 28.9
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.0e-09 66.2 172 34.3
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.0e-07 62.4 232 27.6
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 1.0e-07 62.4 47 57.4
Aa31LG6G7990 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.7e-07 61.6 59 57.6
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.3e-07 61.2 64 46.9
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 5.0e-07 60.1 119 36.1
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 5.0e-07 60.1 203 28.1
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 8.6e-07 59.3 203 27.6
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.5e-06 58.5 93 41.9
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 4.3e-06 57.0 181 30.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 5.6e-06 56.6 147 31.3


User provided reference genes

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