Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 3.7e-126 454.9 232 100.0
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.0e-120 435.3 232 96.1
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.0e-120 435.3 232 96.1
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.6e-119 432.2 232 95.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.6e-119 432.2 232 95.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 7.4e-119 430.6 232 95.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.9e-114 416.0 230 90.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.9e-114 416.0 230 92.2
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.2e-114 414.1 230 90.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 8.0e-113 410.6 230 90.0
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.2e-111 406.8 230 88.7
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.5e-111 404.1 230 88.7
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.7e-107 392.9 228 85.5
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.5e-106 389.8 228 84.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.1e-105 384.4 230 86.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-98 362.8 233 79.4
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.9e-98 362.8 233 79.4
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.3e-91 340.1 230 74.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.1e-90 337.0 230 72.6
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.1e-89 332.8 231 72.7
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.1e-89 332.8 231 72.7
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.8e-89 332.4 230 72.6
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 4.7e-89 331.6 227 70.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 6.1e-89 331.3 231 72.3
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 6.1e-89 331.3 231 72.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 6.1e-89 331.3 231 72.3
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.0e-89 330.9 230 71.3
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.0e-89 330.9 230 71.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 4.9e-86 321.6 230 70.0
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.3e-83 312.8 227 69.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 4.3e-82 308.5 217 66.4
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.6e-81 306.6 217 73.7
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 8.0e-81 304.3 228 63.6
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.8e-80 303.1 226 63.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.6e-79 299.3 223 66.4
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.4e-79 298.9 229 63.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.4e-79 298.5 222 64.0
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 5.8e-79 298.1 218 66.5
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.2e-78 296.2 226 64.6
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.2e-78 296.2 217 64.5
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.9e-78 295.8 221 62.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.7e-78 295.4 217 64.1
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 4.9e-78 295.0 217 65.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.4e-77 293.5 222 61.7
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.4e-77 293.5 224 63.4
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.9e-77 293.1 216 63.4
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-77 293.1 217 64.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.4e-77 292.7 228 60.5
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 3.2e-77 292.4 223 61.9
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 3.2e-77 292.4 226 61.9
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.2e-77 292.4 226 61.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.4e-77 291.6 224 62.9
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.4e-77 291.6 224 62.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 7.0e-77 291.2 224 62.1
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.0e-77 291.2 218 63.8
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.2e-76 290.4 224 62.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.0e-76 289.7 220 64.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.0e-76 289.7 195 72.3
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.7e-76 289.3 222 63.5
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.7e-76 289.3 224 62.5
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.5e-76 288.9 217 63.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 3.5e-76 288.9 224 61.2
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.5e-76 288.9 232 60.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.5e-76 288.9 232 60.8
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.5e-76 288.9 229 62.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 4.6e-76 288.5 214 65.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 4.6e-76 288.5 227 64.3
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 4.6e-76 288.5 224 62.5
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.0e-76 288.1 224 61.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 7.8e-76 287.7 220 61.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.0e-75 287.3 232 60.8
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.0e-75 287.3 224 62.5
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.3e-75 287.0 224 62.1
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.3e-75 286.2 223 61.9
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 3.0e-75 285.8 221 62.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.9e-75 285.4 224 60.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 5.0e-75 285.0 215 62.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 5.0e-75 285.0 216 63.4
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 6.6e-75 284.6 217 61.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 8.6e-75 284.3 224 62.5
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.1e-74 283.9 228 60.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.1e-74 283.9 216 62.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.5e-74 283.5 217 63.1
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 2.5e-74 282.7 217 59.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.3e-74 282.3 224 61.6
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 3.3e-74 282.3 215 61.9
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 4.3e-74 282.0 222 62.6
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.1e-73 279.6 223 60.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.8e-73 279.3 215 60.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.6e-73 278.9 218 61.5
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.6e-73 278.9 223 61.0
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 4.7e-73 278.5 222 59.9
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.7e-73 278.5 217 59.9
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 6.2e-73 278.1 226 59.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.4e-72 276.9 226 61.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.8e-72 276.6 216 60.2
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 3.1e-72 275.8 229 59.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.0e-72 275.4 228 57.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 8.9e-72 274.2 228 58.8
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 8.9e-72 274.2 215 62.8
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.2e-71 273.9 223 60.5
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.3e-70 270.4 221 56.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.3e-70 270.4 195 68.2
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.7e-70 270.0 223 55.6
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.2e-70 269.6 228 59.2
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.7e-70 268.9 247 55.9
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.9e-70 268.5 187 67.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.1e-69 265.4 180 77.2
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 2.7e-68 262.7 197 65.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.6e-68 261.9 227 55.5
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.0e-68 261.5 216 62.5
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.0e-68 261.5 216 62.5
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.3e-67 260.4 254 52.8
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.3e-67 259.6 217 59.0
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 5.6e-66 255.0 224 59.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.1e-65 253.1 227 54.2
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.2e-65 251.5 243 53.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.4e-64 249.6 192 60.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.4e-64 249.6 193 58.5
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.4e-64 249.6 222 54.1
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.2e-64 248.4 182 64.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 6.8e-64 248.1 281 49.5
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 8.4e-62 241.1 221 56.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.7e-60 236.1 188 56.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 2.7e-60 236.1 221 51.6
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.7e-59 233.4 184 61.4
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.1e-57 224.6 217 50.7
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.0e-56 221.1 203 51.7
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.1e-53 214.2 151 65.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 5.4e-53 211.8 190 53.2
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.8e-52 208.0 148 66.9
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-50 204.1 161 60.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.5e-50 203.8 157 59.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.3e-50 202.2 217 46.5
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 4.3e-50 202.2 207 49.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.3e-46 190.7 173 54.9
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.2e-46 189.9 238 45.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.1e-44 183.3 158 51.9
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 4.3e-42 175.6 214 42.1
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 4.8e-41 172.2 211 42.2
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.0e-40 169.1 219 41.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 9.9e-39 164.5 211 41.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.3e-37 157.9 224 42.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 3.3e-34 149.4 123 61.0
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.0e-30 137.9 112 60.7
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.2e-30 136.7 121 52.9
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.4e-29 134.0 178 38.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-29 134.0 127 52.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 7.1e-29 131.7 121 52.1
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 6.0e-28 128.6 86 68.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.3e-26 122.5 71 85.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 3.1e-24 116.3 210 35.2
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.0e-22 111.3 156 36.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-18 96.3 149 39.6
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-18 96.3 149 39.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 3.7e-17 92.8 63 71.4
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 6.5e-14 82.0 74 56.8
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 6.3e-09 65.5 70 41.4
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.9e-07 58.9 77 42.9


User provided reference genes

Program Settings