Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 4.2e-81 304.7 158 100.0
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 2.6e-67 258.8 158 87.3
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 2.6e-67 258.8 158 87.3
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 1.3e-66 256.5 158 86.7
A05p23830 Brassica napus HOM05D010872 ORTHO05D013672 1.1e-60 236.9 158 81.0
BraA05t21254Z Brassica rapa HOM05D010872 ORTHO05D013672 1.1e-60 236.9 158 81.0
Sp1g29940 Schrenkiella parvula HOM05D010872 ORTHO05D013672 6.7e-55 217.6 161 73.3
Thhalv10001870m.g Eutrema salsugineum HOM05D010872 ORTHO05D013672 2.5e-41 172.6 143 68.5
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 5.7e-38 161.4 162 63.0
AL1G49920 Arabidopsis lyrata HOM05D010872 ORTHO05D013672 1.7e-37 159.8 168 60.1
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 1.4e-36 156.8 150 62.7
CARHR287280 Cardamine hirsuta HOM05D010872 ORTHO05D013672 4.5e-35 151.8 157 61.1
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 3.7e-21 105.5 153 48.4
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 4.6e-19 98.6 135 48.9
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.3e-10 69.7 149 40.3
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 5.6e-09 65.1 110 43.6
Sp1g19950 Schrenkiella parvula HOM05D009138 ORTHO05D011294 1.6e-08 63.5 102 42.2
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 6.2e-08 61.6 147 38.1
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 8.1e-08 61.2 46 50.0
Aa31LG7G6390 Aethionema arabicum HOM05D009138 ORTHO05D011294 2.3e-07 59.7 92 45.7
A09p42310 Brassica napus HOM05D009138 ORTHO05D011294 2.3e-07 59.7 103 39.8
BraA09t39712Z Brassica rapa HOM05D009138 ORTHO05D011294 2.3e-07 59.7 103 39.8
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 4.0e-07 58.9 131 38.9
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 4.0e-07 58.9 45 48.9
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 4.0e-07 58.9 108 39.8
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 5.2e-07 58.5 128 38.3
AT1G72240 Arabidopsis thaliana HOM05D009138 ORTHO05D011294 6.8e-07 58.2 77 48.1
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 1.2e-06 57.4 137 34.3
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.5e-06 57.0 121 38.0
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.5e-06 57.0 130 35.4
Thhalv10009293m.g Eutrema salsugineum HOM05D009138 ORTHO05D011294 2.0e-06 56.6 108 40.7
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 2.0e-06 56.6 61 50.8
Carub.0001s2200 Capsella rubella HOM05D009138 ORTHO05D011294 3.4e-06 55.8 89 44.9
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 3.4e-06 55.8 119 37.8
C05p21570 Brassica napus HOM05D009138 ORTHO05D011294 4.4e-06 55.5 103 39.8
BolC5t30852H Brassica oleracea HOM05D009138 ORTHO05D011294 4.4e-06 55.5 103 39.8
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 4.4e-06 55.5 130 35.4
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 4.4e-06 55.5 35 68.6
C02p29650 Brassica napus HOM05D009138 ORTHO05D011294 5.8e-06 55.1 78 44.9
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.8e-06 55.1 138 34.1
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 5.8e-06 55.1 145 34.5
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 7.6e-06 54.7 41 63.4
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 7.6e-06 54.7 127 37.8
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 9.9e-06 54.3 154 34.4
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 9.9e-06 54.3 138 34.1
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 9.9e-06 54.3 137 37.2


User provided reference genes

Program Settings