Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 5.0e-70 268.1 181 100.0
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.6e-66 255.8 182 75.8
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 5.7e-66 254.6 181 96.1
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 2.8e-65 252.3 182 74.7
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 2.8e-65 252.3 182 74.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.8e-65 252.3 181 96.1
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 9.1e-64 247.3 181 90.6
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.5e-61 240.0 179 90.5
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 9.4e-61 237.3 177 91.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.6e-60 236.5 180 91.1
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.1e-60 236.1 181 90.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.7e-60 235.7 179 91.1
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 85.2
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 85.9
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 4.7e-52 208.4 179 75.4
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 8.0e-52 207.6 177 84.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.8e-51 206.5 183 81.4
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.0e-51 205.7 177 62.1
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 80.1
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.0e-50 203.0 176 79.5
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.4e-50 202.2 176 81.8
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.4e-50 202.2 179 83.2
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 5.7e-50 201.4 181 81.2
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 7.5e-50 201.1 176 80.1
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 9.8e-50 200.7 176 81.8
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.7e-49 199.9 176 82.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 81.8
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 79.5
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 79.5
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 3.7e-49 198.7 176 79.0
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 8.3e-49 197.6 176 76.1
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-48 197.2 176 81.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 79.5
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 76.7
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 80.7
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 80.7
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.4e-48 196.1 177 81.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 3.1e-48 195.7 176 78.4
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 5.4e-48 194.9 176 76.1
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.4e-48 194.9 176 80.7
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.2e-47 193.7 176 75.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.6e-47 193.4 176 80.1
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.5e-47 192.2 181 75.7
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 3.5e-47 192.2 176 79.0
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 5.9e-47 191.4 176 80.7
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 5.9e-47 191.4 176 79.0
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.3e-46 190.3 179 76.5
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-46 189.9 176 56.8
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.7e-46 189.9 176 80.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.3e-46 189.5 176 77.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.3e-46 189.5 176 78.4
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.3e-46 189.5 176 78.4
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.9e-46 189.1 176 80.7
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.8e-46 188.7 176 77.3
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 6.6e-46 188.0 176 79.0
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.5e-45 186.8 176 77.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.9e-45 186.4 176 77.3
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.9e-45 186.4 176 77.8
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.3e-45 185.7 176 77.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.3e-45 185.7 175 79.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.2e-45 185.3 179 70.4
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 4.2e-45 185.3 176 77.3
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 5.5e-45 184.9 176 77.8
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 7.2e-45 184.5 176 76.7
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.2e-44 183.7 250 46.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 2.1e-44 183.0 176 77.3
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.1e-44 183.0 176 77.3
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 6.1e-44 181.4 176 76.1
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 8.0e-44 181.0 176 77.8
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 8.0e-44 181.0 176 76.7
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.0e-43 180.6 176 76.7
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.4e-43 180.3 176 76.7
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.8e-43 179.9 178 75.3
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 2.3e-43 179.5 176 76.1
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 6.8e-43 177.9 179 55.3
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.2e-42 177.2 176 76.1
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.5e-42 176.8 176 76.1
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 3.4e-42 175.6 197 71.1
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.4e-42 175.3 176 76.7
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 5.7e-42 174.9 176 75.6
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.7e-41 173.3 179 73.7
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-41 173.3 199 48.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 1.7e-41 173.3 176 51.1
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 5.4e-40 168.3 157 80.9
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 4.5e-39 165.2 181 69.6
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 3.9e-38 162.2 176 73.3
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.1e-37 160.6 180 48.3
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.6e-37 158.3 176 70.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 5.6e-37 158.3 206 60.2
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.6e-36 156.8 197 45.2
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.4e-35 153.7 181 47.5
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.0e-34 149.8 88 80.7
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.6e-34 149.4 180 43.3
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.3e-33 147.1 147 79.6
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.9e-33 146.0 175 49.7
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 88 76.1
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 4.9e-33 145.2 177 63.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 6.4e-33 144.8 141 70.9
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.1e-32 144.1 84 78.6
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 2.4e-32 142.9 140 79.3
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.2e-32 142.5 89 75.3
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.2e-31 140.6 89 74.2
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.2e-31 140.6 176 44.9
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.0e-31 139.8 176 68.2
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.0e-31 138.3 88 73.9
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 6.0e-31 138.3 176 47.2
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.3e-30 136.3 172 45.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 3.9e-30 135.6 140 79.3
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 6.6e-30 134.8 89 73.0
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.9e-29 133.3 89 71.9
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.5e-29 132.9 149 53.0
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.8e-27 126.7 142 76.1
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 3.4e-26 122.5 88 63.6
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.4e-24 116.3 125 70.4
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.7e-22 110.2 215 37.2
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.3e-21 105.5 124 48.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.0e-19 99.0 118 48.3
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.3e-17 94.0 167 38.3
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 8.6e-14 81.3 116 39.7
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.8e-09 65.9 122 38.5
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 1.9e-08 63.5 36 83.3
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.7e-07 59.7 36 77.8
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 1.0e-06 57.8 36 77.8
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 36 72.2


User provided reference genes

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