Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 4.7e-77 291.2 156 100.0
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 2.4e-76 288.9 156 99.4
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 1.9e-73 279.3 156 98.1
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 4.1e-73 278.1 156 97.4
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 5.6e-70 267.7 154 94.2
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 3.7e-53 211.8 160 76.2
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 3.8e-50 201.8 156 74.4
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 6.0e-48 194.5 156 72.4
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 6.2e-45 184.5 159 71.7
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 6.9e-44 181.0 157 70.7
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 1.8e-39 166.4 156 67.3
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 9.7e-30 134.0 156 57.1
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 2.0e-27 126.3 156 54.5
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 5.9e-27 124.8 163 50.3
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 1.0e-26 124.0 160 50.6
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 1.8e-23 113.2 170 45.9
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 6.7e-23 111.3 178 48.3
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 8.8e-23 110.9 171 46.8
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 8.8e-23 110.9 164 47.0
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 8.8e-23 110.9 165 46.1
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 8.8e-23 110.9 162 46.9
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 1.1e-22 110.5 177 48.0
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 1.1e-22 110.5 155 47.1
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 2.6e-22 109.4 156 49.4
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 3.3e-22 109.0 161 46.6
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 4.4e-22 108.6 169 49.1
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.3e-21 107.1 155 47.1
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.3e-21 107.1 155 47.1
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 1.7e-21 106.7 165 46.7
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 2.2e-21 106.3 165 47.3
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 2.2e-21 106.3 153 46.4
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 2.8e-21 105.9 154 45.5
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.7e-21 105.5 155 46.5
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 3.7e-21 105.5 181 43.1
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 4.8e-21 105.1 168 48.8
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 6.3e-21 104.8 171 43.9
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 6.3e-21 104.8 177 46.3
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 8.2e-21 104.4 156 49.4
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 8.2e-21 104.4 165 46.7
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 1.4e-20 103.6 162 45.1
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 3.1e-20 102.4 176 46.0
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 3.1e-20 102.4 165 43.6
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 4.1e-20 102.1 165 46.7
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 5.3e-20 101.7 157 45.9
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 5.3e-20 101.7 165 44.2
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 1.2e-19 100.5 173 43.4
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 2.0e-19 99.8 164 43.9
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 2.0e-19 99.8 159 45.3
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 3.5e-19 99.0 159 42.1
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 7.7e-19 97.8 160 43.8
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 2.2e-18 96.3 157 43.9
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 2.2e-18 96.3 178 39.9
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 2.9e-18 95.9 158 41.8
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 3.8e-18 95.5 156 44.9
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 8.5e-18 94.4 158 41.1
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 1.4e-17 93.6 157 40.1
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 1.4e-17 93.6 156 40.4
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 2.5e-17 92.8 163 42.9
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 5.5e-17 91.7 159 40.9
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 4.7e-16 88.6 166 38.0
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 4.7e-16 88.6 151 43.7
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 8.0e-16 87.8 159 41.5
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 1.0e-15 87.4 157 40.8
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 1.8e-15 86.7 169 37.9
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 8.8e-15 84.3 170 37.6
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 2.0e-14 83.2 168 39.3
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 2.0e-14 83.2 156 37.2
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 2.0e-14 83.2 185 35.7
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 2.6e-14 82.8 184 34.8
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 4.4e-14 82.0 173 39.3
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 5.7e-14 81.6 173 39.3
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 7.4e-14 81.3 169 37.3
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 9.7e-14 80.9 156 37.2
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 2.8e-13 79.3 184 35.3
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 4.8e-13 78.6 154 37.7
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 1.8e-12 76.6 163 38.7
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 5.3e-12 75.1 147 43.5
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 5.3e-12 75.1 164 34.8
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 2.0e-11 73.2 158 38.6
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 2.6e-11 72.8 155 40.6
HanXRQChr04g0121781 Helianthus annuus HOM05D007580 ORTHO05D009620 5.9e-11 71.6 154 33.1
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 1.3e-10 70.5 111 46.8
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 1.7e-10 70.1 163 36.8
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 5.0e-10 68.6 142 35.9
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 6.5e-10 68.2 154 37.0
MBI12_g06406_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 1.5e-09 67.0 153 33.3
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 1.9e-09 66.6 145 37.2
MBI12_g45243_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 3.2e-09 65.9 153 35.9
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 2.1e-08 63.2 76 47.4


User provided reference genes

Program Settings