Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 1.0e-117 426.8 225 100.0
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 3.4e-108 395.2 224 91.5
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 8.3e-107 390.6 224 90.6
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 5.9e-105 384.4 225 89.3
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 1.0e-104 383.6 225 88.9
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 9.8e-100 367.1 228 84.6
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.3e-96 356.7 228 81.1
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 3.9e-96 355.1 227 81.5
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 3.9e-96 355.1 228 82.0
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 6.8e-93 344.4 228 79.4
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 8.1e-78 294.3 225 69.3
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 3.1e-77 292.4 227 71.8
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 8.9e-77 290.8 222 68.5
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 9.9e-76 287.3 220 68.2
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 2.9e-75 285.8 220 67.3
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 2.9e-75 285.8 225 66.7
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 8.4e-75 284.3 220 67.3
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 1.9e-74 283.1 222 66.7
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 3.0e-72 275.8 224 63.8
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 9.6e-71 270.8 308 55.5
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.2e-70 270.4 249 59.4
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 2.8e-70 269.2 248 59.7
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 4.3e-63 245.4 180 75.0
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 9.6e-63 244.2 224 58.0
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 2.1e-62 243.0 194 66.5
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 4.8e-62 241.9 224 56.7
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 8.1e-62 241.1 291 54.0
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.8e-61 240.0 223 57.8
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 6.9e-61 238.0 231 57.1
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 1.2e-60 237.3 224 54.0
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.0e-60 236.5 226 57.5
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 2.6e-60 236.1 222 57.2
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 2.2e-59 233.0 223 55.2
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 8.4e-59 231.1 225 55.1
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 3.2e-58 229.2 226 54.9
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 5.4e-58 228.4 225 54.7
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 5.4e-58 228.4 224 55.8
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 7.1e-58 228.0 223 55.2
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 1.2e-57 227.3 223 55.2
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 4.6e-57 225.3 218 54.6
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 6.0e-57 224.9 216 56.9
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 7.9e-57 224.6 230 53.5
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 1.7e-56 223.4 226 54.4
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 8.7e-56 221.1 226 52.7
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 8.7e-56 221.1 223 53.4
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 1.1e-55 220.7 222 54.5
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 3.3e-55 219.2 219 52.5
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 3.3e-55 219.2 222 54.1
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 4.3e-55 218.8 222 54.1
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.4e-55 218.0 222 53.6
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 7.4e-55 218.0 225 53.3
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 9.6e-55 217.6 224 52.7
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 2.8e-54 216.1 224 52.7
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.8e-54 216.1 222 53.6
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 3.6e-54 215.7 224 52.7
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 4.8e-54 215.3 223 52.5
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 6.2e-54 214.9 223 50.7
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 4.0e-53 212.2 218 50.9
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.0e-53 212.2 228 52.2
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 1.2e-52 210.7 219 50.2
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 3.4e-52 209.1 217 51.6
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 3.4e-52 209.1 221 51.6
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 4.5e-52 208.8 221 51.1
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 9.9e-52 207.6 223 51.1
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 1.3e-51 207.2 221 51.1
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 1.3e-51 207.2 221 51.1
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.9e-51 205.3 232 50.9
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 6.4e-51 204.9 217 51.2
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 6.4e-51 204.9 216 51.9
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 8.4e-51 204.5 195 55.9
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 1.1e-50 204.1 222 49.1
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 1.1e-50 204.1 230 47.8
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 3.2e-50 202.6 216 52.3
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 7.1e-50 201.4 222 48.2
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 3.0e-48 196.1 228 46.9
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 1.5e-47 193.7 213 51.6
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 1.5e-47 193.7 217 47.5
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 1.9e-47 193.4 211 48.3
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 3.3e-47 192.6 223 48.4
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.3e-47 192.2 235 48.9
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.1e-46 189.9 224 49.1
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 6.2e-46 188.3 216 46.3
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 3.1e-45 186.0 235 46.0
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 2.0e-44 183.3 220 44.1
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 2.0e-44 183.3 217 47.5
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 3.9e-40 169.1 218 44.0
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 6.7e-40 168.3 172 53.5
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 1.1e-39 167.5 118 79.7
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 1.5e-39 167.2 192 55.2
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 9.6e-39 164.5 213 47.4
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 2.8e-38 162.9 199 47.2
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 4.8e-38 162.2 217 42.9
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 2.0e-36 156.8 227 42.7
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 2.0e-36 156.8 310 35.2
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 5.9e-36 155.2 141 53.9
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 2.9e-35 152.9 192 46.9
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 6.5e-35 151.8 221 43.0
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 3.2e-34 149.4 190 46.3
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 1.6e-33 147.1 179 49.7
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.6e-33 147.1 216 41.2
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 8.7e-32 141.4 211 43.1
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 7.4e-31 138.3 249 38.2
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 1.8e-29 133.7 156 48.7
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 3.1e-29 132.9 195 39.5
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 6.9e-29 131.7 89 62.9
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 9.0e-29 131.3 184 41.3
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 3.4e-28 129.4 189 39.7
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 1.3e-27 127.5 207 35.7
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 2.5e-26 123.2 210 39.5
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 4.2e-26 122.5 277 32.5
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 6.7e-24 115.2 82 82.9
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 2.5e-23 113.2 74 62.2
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 3.3e-23 112.8 210 35.2
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 4.3e-23 112.5 73 63.0
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 4.3e-23 112.5 137 45.3
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 2.2e-22 110.2 226 32.7
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.5e-20 104.0 132 50.0
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 2.0e-20 103.6 126 46.0
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 2.5e-18 96.7 237 32.9
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 8.8e-16 88.2 121 41.3
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.5e-15 87.4 79 57.0
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 4.4e-15 85.9 188 34.0
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 7.4e-15 85.1 113 48.7
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 9.4e-10 68.2 162 33.3
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 1.5e-07 60.8 58 56.9


User provided reference genes

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