Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 3.3e-66 255.0 136 100.0
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 5.6e-42 174.5 130 78.5
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 9.6e-42 173.7 130 78.5
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 2.8e-41 172.2 130 77.7
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 1.1e-40 170.2 130 76.9
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 1.8e-40 169.5 130 76.9
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 9.9e-39 163.7 127 73.2
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 4.9e-38 161.4 120 80.0
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 1.9e-37 159.5 129 70.5
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 2.3e-35 152.5 136 65.4
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 5.1e-35 151.4 131 68.7
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 5.1e-35 151.4 131 67.2
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.1e-34 150.2 130 66.9
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.9e-34 149.4 128 68.0
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 2.5e-34 149.1 131 66.4
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 4.8e-33 144.8 116 72.4
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 4.8e-33 144.8 122 68.9
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.8e-32 142.9 132 66.7
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.0e-30 137.1 113 69.9
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 9.3e-29 130.6 130 59.2
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 2.7e-28 129.0 128 59.4
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 2.5e-26 122.5 128 58.6
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 1.3e-25 120.2 127 56.7
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.6e-25 119.8 127 57.5
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 2.2e-25 119.4 128 55.5
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.8e-25 119.0 127 59.1
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.8e-25 119.0 127 59.1
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.1e-24 117.1 129 54.3
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.1e-24 117.1 127 58.3
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.8e-24 116.3 124 57.3
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 4.1e-24 115.2 129 53.5
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 4.1e-24 115.2 125 60.0
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 6.9e-24 114.4 126 54.8
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 9.0e-24 114.0 124 54.0
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 9.0e-24 114.0 124 54.0
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.5e-23 113.2 127 54.3
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 2.0e-23 112.8 129 50.4
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 2.0e-23 112.8 126 56.3
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 4.5e-23 111.7 127 54.3
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 5.9e-23 111.3 124 53.2
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 5.9e-23 111.3 127 53.5
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 7.6e-23 110.9 118 60.2
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.7e-22 109.8 118 59.3
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.7e-22 109.8 129 48.8
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.7e-22 109.8 127 52.0
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.7e-22 109.8 122 54.1
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.2e-22 109.4 80 81.2
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.2e-22 109.4 119 58.8
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 2.9e-22 109.0 125 50.4
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.9e-22 109.0 127 51.2
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 3.8e-22 108.6 124 52.4
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 5.0e-22 108.2 120 53.3
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 6.5e-22 107.8 127 52.0
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 1.4e-21 106.7 128 51.6
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 1.4e-21 106.7 80 80.0
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.4e-21 106.7 129 50.4
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 1.4e-21 106.7 124 49.2
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 2.5e-21 105.9 127 50.4
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.2e-21 105.5 125 51.2
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 9.4e-21 104.0 129 46.5
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 9.4e-21 104.0 121 52.1
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.2e-20 103.6 130 53.1
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 1.2e-20 103.6 121 52.9
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.6e-20 103.2 124 48.4
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 2.1e-20 102.8 115 61.7
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.1e-20 102.8 127 53.5
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 7.9e-20 100.9 126 50.8
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 7.9e-20 100.9 125 52.8
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.0e-19 100.5 129 45.0
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.8e-19 99.8 129 43.4
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 1.8e-19 99.8 128 46.9
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 3.0e-19 99.0 131 48.9
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 3.0e-19 99.0 119 50.4
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 3.9e-19 98.6 127 48.0
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 5.1e-19 98.2 148 45.9
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 5.1e-19 98.2 118 53.4
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 8.8e-19 97.4 148 45.9
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 8.8e-19 97.4 121 43.8
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 3.3e-18 95.5 127 46.5
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 5.7e-18 94.7 123 46.3
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 7.4e-18 94.4 122 48.4
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 7.4e-18 94.4 119 46.2
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 9.7e-18 94.0 119 48.7
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.7e-17 93.2 116 50.0
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.7e-17 93.2 124 46.0
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 2.2e-17 92.8 123 44.7
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.2e-17 92.8 125 45.6
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 4.8e-17 91.7 117 47.9
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 8.2e-17 90.9 80 62.5
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 1.4e-16 90.1 77 66.2
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.8e-16 89.7 117 47.0
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 3.1e-16 89.0 125 44.0
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.1e-16 88.6 124 48.4
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 4.1e-16 88.6 152 40.1
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 6.9e-16 87.8 127 44.9
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 9.1e-16 87.4 122 48.4
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 9.1e-16 87.4 75 65.3
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 2.6e-15 85.9 117 47.0
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 5.9e-15 84.7 122 45.9
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.7e-15 84.3 82 58.5
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 1.3e-14 83.6 77 67.5
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 5.0e-14 81.6 78 59.0
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 2.5e-13 79.3 75 60.0
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 7.2e-13 77.8 59 71.2
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.6e-12 76.6 134 41.0
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 1.4e-11 73.6 59 72.9
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.8e-11 73.2 122 42.6
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 2.3e-11 72.8 126 37.3
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 3.9e-11 72.0 78 52.6
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.1e-10 70.5 132 43.2
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.5e-10 70.1 62 64.5
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 5.7e-10 68.2 74 54.1
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-09 67.0 141 38.3
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 3.7e-09 65.5 142 38.0
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.8e-08 63.2 70 55.7
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 9.1e-08 60.8 88 47.7
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 1.2e-07 60.5 62 54.8
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 1.2e-07 60.5 101 41.6
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 3.4e-07 58.9 83 48.2
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 4.5e-07 58.5 140 34.3
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 1.0e-06 57.4 109 43.1
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 2.2e-06 56.2 46 65.2
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 2.2e-06 56.2 121 34.7
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 2.2e-06 56.2 94 43.6
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 6.5e-06 54.7 67 44.8


User provided reference genes

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