Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 2.2e-191 672.2 353 100.0
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 2.1e-165 585.9 352 88.4
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 4.0e-164 581.6 353 88.7
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 1.4e-161 573.2 353 86.1
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 1.4e-161 573.2 353 86.1
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 4.5e-160 568.2 359 85.0
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 9.8e-155 550.4 352 83.8
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 2.4e-153 545.8 356 83.1
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 1.0e-143 513.8 350 80.3
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 1.7e-143 513.1 355 80.0
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 3.3e-142 508.8 355 79.4
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 1.4e-140 503.4 359 78.3
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 6.4e-130 468.0 347 72.0
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 7.4e-110 401.4 353 66.0
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 6.5e-98 361.7 359 56.3
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 1.3e-93 347.4 335 56.4
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 6.9e-92 341.7 349 55.9
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 2.6e-91 339.7 338 55.9
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.2e-90 336.7 352 56.0
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 7.2e-89 331.6 349 55.3
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 1.2e-88 330.9 338 55.9
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.1e-88 330.1 333 55.3
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 2.7e-88 329.7 340 54.7
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 3.6e-88 329.3 333 55.3
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 4.6e-88 328.9 337 53.7
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 6.1e-88 328.6 344 54.1
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 1.0e-87 327.8 337 53.4
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 1.0e-87 327.8 338 53.0
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 3.0e-87 326.2 333 52.3
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 5.1e-87 325.5 335 55.2
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 6.7e-87 325.1 328 55.5
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 1.9e-86 323.6 349 53.3
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 4.3e-86 322.4 356 50.6
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 2.8e-85 319.7 343 53.4
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.1e-84 317.8 321 53.9
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 1.1e-84 317.8 326 52.5
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.4e-84 317.4 337 51.9
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 4.1e-84 315.8 320 55.6
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 6.9e-84 315.1 330 53.6
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 1.5e-83 313.9 340 55.6
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 2.0e-83 313.5 373 48.8
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 5.9e-83 312.0 324 53.1
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 7.7e-83 311.6 327 53.5
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.3e-82 310.8 338 53.6
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 6.5e-82 308.5 338 52.7
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 8.5e-82 308.1 356 50.8
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 1.9e-81 307.0 358 50.3
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 5.5e-81 305.4 328 55.5
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 2.1e-80 303.5 323 52.6
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 3.6e-80 302.8 331 52.6
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 7.9e-80 301.6 328 49.7
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 1.0e-79 301.2 335 50.1
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 3.9e-79 299.3 352 49.4
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 6.7e-79 298.5 348 49.7
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 8.8e-79 298.1 328 50.3
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 1.5e-78 297.4 324 51.9
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.3e-78 296.2 318 53.1
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 7.4e-78 295.0 335 49.0
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 9.7e-78 294.7 321 50.5
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 1.7e-77 293.9 334 52.4
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 6.3e-77 292.0 324 51.2
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 6.3e-77 292.0 353 49.9
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 8.2e-77 291.6 322 52.8
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 8.2e-77 291.6 348 48.0
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.4e-76 290.8 333 52.3
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 1.8e-76 290.4 339 51.0
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 2.0e-75 287.0 333 52.0
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.6e-75 286.6 327 52.9
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 4.5e-75 285.8 354 49.2
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 5.9e-75 285.4 321 51.1
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 7.7e-75 285.0 331 52.3
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.3e-74 284.3 346 49.7
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.2e-74 283.5 331 52.6
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 2.2e-74 283.5 350 50.3
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 1.4e-73 280.8 337 47.8
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 1.4e-73 280.8 331 47.7
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 7.2e-73 278.5 323 48.9
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.2e-72 277.7 378 46.0
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.6e-72 277.3 341 48.7
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 2.7e-72 276.6 338 50.3
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 2.7e-72 276.6 317 49.5
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 3.6e-72 276.2 339 46.6
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 6.7e-71 271.9 338 46.7
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 4.4e-70 269.2 440 40.5
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 2.8e-69 266.5 326 47.2
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 1.0e-66 258.1 351 45.9
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 2.9e-66 256.5 284 49.3
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 7.2e-65 251.9 270 53.3
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 6.1e-64 248.8 337 47.2
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 8.0e-64 248.4 251 56.2
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 5.2e-63 245.7 315 45.7
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 3.8e-58 229.6 380 40.5
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 1.1e-52 211.5 253 51.0
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 6.1e-48 195.7 247 46.2
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 1.8e-47 194.1 444 33.8
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.0e-39 168.3 371 30.7
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 3.0e-39 166.8 359 33.1
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 3.0e-39 166.8 179 53.1
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 8.6e-34 148.7 137 59.9
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 2.5e-33 147.1 223 41.7
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 1.1e-31 141.7 305 35.4
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 8.9e-23 112.1 119 54.6
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 1.7e-21 107.8 82 65.9
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 2.2e-21 107.5 486 25.9
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.9e-20 104.4 222 33.8
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 4.6e-19 99.8 78 67.9
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 7.8e-19 99.0 272 29.4
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 1.0e-18 98.6 97 54.6
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 1.7e-18 97.8 184 38.0
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 3.3e-17 93.6 82 58.5
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 1.6e-16 91.3 69 63.8
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 1.5e-14 84.7 111 45.0
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 4.1e-12 76.6 208 29.3
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 5.4e-12 76.3 60 63.3
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 1.6e-11 74.7 204 29.4
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 2.3e-10 70.9 54 55.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.3e-10 70.9 136 32.4
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 8.7e-10 68.9 62 53.2
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 4.7e-08 63.2 139 30.2
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 1.4e-07 61.6 43 65.1


User provided reference genes

Program Settings