Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 3.8e-140 501.5 257 100.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.8e-129 466.1 255 93.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.1e-128 463.4 256 93.8
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-128 463.0 256 93.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.0e-128 462.6 256 93.4
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 7.4e-128 460.7 255 92.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 2.5e-123 445.7 257 89.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 2.6e-120 435.6 255 87.1
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.7e-120 433.7 257 87.2
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.2e-119 432.6 255 87.5
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.7e-117 425.6 255 85.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.7e-117 425.6 255 85.9
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.7e-116 422.9 257 84.8
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.9e-115 419.5 257 85.2
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.2e-114 416.8 257 83.3
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.4e-113 413.3 257 82.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.2e-106 390.2 258 77.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.3e-91 339.0 250 71.6
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.4e-89 333.6 257 68.5
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.4e-87 324.7 257 67.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.1e-86 323.9 257 67.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 4.1e-70 268.9 255 52.9
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.5e-69 265.8 255 52.2
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.1e-68 261.9 255 53.7
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 5.1e-68 261.9 255 54.1
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.6e-67 258.5 255 50.6
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 7.3e-67 258.1 241 55.6
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.6e-67 257.7 255 50.6
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.7e-66 255.4 255 52.5
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 6.9e-65 251.5 240 55.8
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 5.8e-64 248.4 257 49.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 9.9e-64 247.7 255 50.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.3e-63 247.3 268 48.1
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.9e-62 243.4 255 51.0
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-62 243.0 242 52.5
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 2.4e-62 243.0 257 48.2
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 9.3e-62 241.1 238 50.4
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.2e-61 240.7 244 50.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 4.6e-61 238.8 243 52.7
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 6.0e-61 238.4 240 51.2
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 6.0e-61 238.4 248 48.0
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.0e-60 237.7 240 51.7
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 3.9e-60 235.7 257 49.0
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.9e-60 235.7 255 49.0
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 5.1e-60 235.3 242 49.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.1e-59 234.2 255 49.4
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.3e-59 232.6 256 50.4
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 4.3e-59 232.3 241 50.6
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 7.3e-59 231.5 234 50.9
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.3e-59 231.5 255 48.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 9.6e-59 231.1 241 50.6
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-58 230.3 255 49.0
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.8e-58 228.8 256 46.9
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 6.2e-58 228.4 254 46.1
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.4e-57 227.3 240 47.1
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 3.1e-57 226.1 250 49.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.3e-57 225.3 259 49.0
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 9.0e-57 224.6 255 47.5
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 9.0e-57 224.6 240 47.1
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 9.0e-57 224.6 248 48.8
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.2e-56 224.2 255 45.5
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.2e-56 224.2 238 48.3
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.2e-56 224.2 238 50.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.5e-56 223.8 239 49.8
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.5e-56 223.8 241 49.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 3.4e-56 222.6 238 47.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 5.8e-56 221.9 245 49.0
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.6e-56 221.5 237 50.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 7.6e-56 221.5 254 45.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 7.6e-56 221.5 234 48.7
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 9.9e-56 221.1 255 45.9
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 9.9e-56 221.1 238 48.3
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.2e-55 219.9 238 47.5
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.9e-55 219.5 245 47.3
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.4e-55 218.4 237 46.0
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 6.4e-55 218.4 241 48.1
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.1e-54 217.6 257 43.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.1e-54 217.6 243 45.3
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.2e-54 216.1 238 45.8
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.2e-54 216.1 256 46.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.2e-53 214.2 190 58.4
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.2e-53 214.2 242 47.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.2e-53 214.2 227 48.0
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.6e-53 213.8 253 44.7
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.1e-53 213.4 232 46.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.3e-52 209.9 237 47.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.3e-52 209.9 237 47.3
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 3.0e-52 209.5 236 46.6
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 5.1e-52 208.8 241 46.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.1e-51 207.6 257 43.2
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.5e-51 207.2 248 43.5
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.9e-51 206.8 227 47.6
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.9e-51 206.8 232 44.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.5e-51 206.5 242 44.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.3e-51 205.7 236 46.6
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 4.3e-51 205.7 239 47.7
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 5.6e-51 205.3 244 45.1
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 9.6e-51 204.5 236 44.5
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.6e-50 203.8 243 44.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.1e-50 203.4 218 50.5
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.7e-50 202.6 236 46.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 4.8e-50 202.2 211 51.7
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 8.1e-50 201.4 256 43.8
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 8.1e-50 201.4 243 40.3
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 3.1e-49 199.5 243 44.4
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 5.3e-49 198.7 246 43.9
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.3e-49 198.7 227 46.3
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.5e-48 197.2 236 45.3
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.4e-48 196.1 212 51.4
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.4e-48 196.1 212 51.4
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 9.9e-48 194.5 228 46.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.2e-47 193.4 239 44.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.9e-47 193.0 237 45.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 8.4e-47 191.4 216 49.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 4.2e-46 189.1 240 44.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.6e-45 187.2 248 45.6
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.5e-45 186.0 238 42.9
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.6e-45 185.7 248 42.7
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.9e-44 182.6 182 51.6
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.1e-44 182.2 223 47.1
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.3e-43 179.5 164 56.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 9.6e-43 177.9 236 40.3
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.1e-42 176.8 226 46.0
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 6.2e-42 175.3 261 39.5
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 3.4e-40 169.5 212 44.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 3.8e-39 166.0 211 42.2
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 3.8e-39 166.0 209 42.1
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 9.3e-38 161.4 218 44.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-37 160.6 183 46.4
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-37 160.6 183 46.4
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.6e-37 160.6 197 45.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.0e-36 157.9 270 36.7
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 8.7e-36 154.8 241 36.1
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.3e-35 152.5 212 40.6
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.7e-29 133.3 171 43.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 4.3e-27 125.9 246 30.9
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.0e-23 112.5 167 38.9
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.5e-23 112.1 104 51.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 3.2e-22 109.8 255 30.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 3.6e-21 106.3 136 44.1
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 6.1e-21 105.5 103 51.5
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-18 97.8 87 54.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-17 94.7 103 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 3.1e-17 93.2 189 34.4
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 4.1e-17 92.8 139 39.6
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.5e-16 90.9 91 50.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-13 80.9 86 44.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 4.7e-13 79.3 115 38.3
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-12 77.8 125 34.4
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.8e-12 77.4 139 34.5
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-08 63.9 47 70.2
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 3.8e-07 59.7 44 65.9
C03p12380 Brassica napus HOM05D000444 ORTHO05D000489 4.2e-06 56.2 25 96.0


User provided reference genes

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