Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 2.3e-210 735.3 376 100.0
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 2.0e-206 722.2 376 97.9
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 2.2e-205 718.8 376 97.6
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 2.2e-205 718.8 376 97.6
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 2.2e-205 718.8 376 97.6
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 6.4e-205 717.2 376 97.3
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.9e-201 705.7 376 94.9
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 4.3e-201 704.5 376 94.7
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 5.7e-201 704.1 376 95.2
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 1.6e-200 702.6 376 94.9
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 2.8e-200 701.8 376 94.7
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.1e-199 699.9 376 94.7
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 2.4e-199 698.7 376 94.1
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 4.0e-199 698.0 376 94.4
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.0e-199 696.8 376 94.4
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 1.5e-198 696.0 376 94.1
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 2.6e-198 695.3 376 93.6
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 3.4e-198 694.9 376 93.9
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 3.5e-195 684.9 376 92.0
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 1.6e-192 676.0 376 91.0
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 6.3e-192 674.1 376 91.8
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 6.7e-178 627.5 378 84.9
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 7.7e-174 614.0 378 81.7
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.0e-173 613.6 376 81.9
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 2.2e-173 612.5 377 82.8
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 5.0e-173 611.3 377 82.2
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 3.2e-172 608.6 376 81.4
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.8e-170 602.8 378 81.2
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 3.9e-170 601.7 379 80.7
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 8.8e-170 600.5 355 85.6
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 8.8e-170 600.5 376 80.1
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 2.0e-169 599.4 381 81.1
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.6e-169 599.0 377 81.7
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 9.7e-169 597.0 369 82.4
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 1.3e-168 596.7 376 81.1
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.7e-168 596.3 364 83.8
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 1.1e-167 593.6 370 81.1
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.4e-167 593.2 377 81.4
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.4e-167 593.2 380 82.1
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 1.4e-167 593.2 356 83.1
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 1.4e-167 593.2 356 83.1
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.4e-167 593.2 348 84.8
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.8e-167 592.8 366 82.2
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 1.8e-167 592.8 367 80.9
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.8e-167 592.8 367 83.1
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 2.4e-167 592.4 376 80.9
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 2.4e-167 592.4 348 84.8
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 2.4e-167 592.4 371 82.7
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 4.1e-167 591.7 379 79.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 5.3e-167 591.3 372 82.3
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 5.3e-167 591.3 376 80.9
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 7.0e-167 590.9 376 81.1
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 348 84.5
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 348 84.5
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 7.0e-167 590.9 378 80.2
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.1e-167 590.5 348 84.5
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.0e-166 589.3 348 84.2
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 2.0e-166 589.3 364 83.5
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 2.6e-166 589.0 378 79.9
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 3.5e-166 588.6 381 80.1
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.9e-166 587.8 348 84.2
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.7e-165 586.3 376 79.5
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 1.7e-165 586.3 381 79.8
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.7e-165 586.3 366 81.4
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.2e-165 585.9 376 79.5
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 5.0e-165 584.7 377 79.3
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 8.5e-165 583.9 345 84.9
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.5e-164 583.2 376 79.8
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.5e-164 583.2 382 78.8
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.9e-164 582.8 345 84.9
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 3.2e-164 582.0 356 82.9
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 9.4e-164 580.5 376 79.0
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 2.1e-163 579.3 376 79.5
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 3.6e-163 578.6 377 78.8
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 4.7e-163 578.2 376 79.0
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 4.7e-163 578.2 381 78.2
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 6.1e-163 577.8 364 80.8
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 8.0e-163 577.4 359 83.0
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 8.0e-163 577.4 345 83.8
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 8.0e-163 577.4 357 82.6
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.0e-162 577.0 385 77.4
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 1.4e-162 576.6 381 78.7
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.8e-162 576.2 376 78.5
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.8e-162 576.2 383 77.3
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.0e-162 575.5 376 78.2
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 5.2e-162 574.7 355 82.0
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 5.2e-162 574.7 363 81.5
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 5.2e-162 574.7 375 79.2
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 8.8e-162 573.9 345 84.9
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 1.2e-161 573.5 363 81.3
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 1.5e-161 573.2 375 80.0
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 1.5e-161 573.2 369 80.8
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.5e-161 573.2 363 79.6
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 2.0e-161 572.8 347 83.0
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 2.6e-161 572.4 362 80.1
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 5.7e-161 571.2 372 78.8
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 9.8e-161 570.5 372 78.5
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.7e-160 569.7 345 84.1
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 3.7e-160 568.5 380 77.9
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 8.3e-160 567.4 347 82.4
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.4e-159 566.6 374 79.1
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.4e-159 566.6 353 79.3
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.8e-159 566.2 395 74.7
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 2.7e-158 562.4 394 76.4
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 1.3e-157 560.1 378 76.2
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.7e-157 559.7 378 76.2
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 2.9e-157 558.9 354 79.7
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 2.9e-157 558.9 347 80.1
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 8.5e-157 557.4 362 77.6
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.5e-156 556.6 370 78.1
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.9e-156 556.2 377 75.9
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 2.6e-153 545.8 350 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 3.4e-153 545.4 355 77.2
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.4e-153 545.0 397 71.8
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 7.5e-153 544.3 322 84.5
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.2e-152 542.7 353 77.6
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 3.1e-151 538.9 345 79.1
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 1.2e-150 537.0 370 74.9
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 1.0e-149 533.9 371 76.0
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 1.8e-146 523.1 383 73.6
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 5.4e-143 511.5 323 78.9
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 5.4e-143 511.5 361 74.0
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 5.9e-142 508.1 294 86.1
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 1.2e-139 500.4 337 75.7
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 2.0e-137 493.0 368 68.5
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 7.5e-137 491.1 337 74.8
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 2.1e-131 473.0 359 69.6
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.1e-131 473.0 294 80.3
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 1.5e-121 440.3 306 72.5
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 6.6e-117 424.9 324 71.3
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 3.4e-105 386.0 225 86.2
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 4.3e-84 315.8 188 84.6
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 2.1e-83 313.5 186 84.9
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.7e-62 242.7 165 74.5
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.9e-61 239.6 165 73.3
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 2.2e-59 233.8 177 70.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 6.3e-59 232.3 118 96.6
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 2.4e-58 230.3 118 95.8
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 4.0e-53 213.0 240 52.9
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.8e-50 204.1 138 74.6
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.2e-47 193.0 125 76.8
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.2e-47 193.0 170 62.4
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.2e-47 193.0 170 62.4
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.1e-46 190.7 121 77.7
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 6.1e-38 162.5 97 81.4
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 1.4e-37 161.4 102 77.5
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.2e-36 158.3 119 75.6
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.8e-36 155.2 79 96.2
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 1.1e-31 141.7 113 64.6
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.3e-31 140.2 158 52.5
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 3.3e-31 140.2 71 95.8
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.6e-30 137.9 67 97.0
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.1e-30 137.5 116 62.9
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.7e-30 136.3 139 54.0
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 5.2e-29 132.9 67 95.5
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 8.9e-29 132.1 113 61.9
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 1.5e-28 131.3 77 83.1
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 2.0e-28 131.0 88 73.9
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 4.4e-28 129.8 72 90.3
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.3e-27 128.3 77 79.2
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.6e-25 121.3 113 61.1
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 8.3e-19 99.0 81 67.9
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 6.0e-17 92.8 59 78.0
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 1.6e-14 84.7 58 69.0
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.1e-13 82.0 52 71.2
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.3e-11 75.1 40 95.0
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 1.9e-10 71.2 270 27.0
C05p12750 Brassica napus HOM05D004220 ORTHO05D040138 4.7e-06 56.6 29 96.6


User provided reference genes

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