Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 3.9e-134 481.5 247 100.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.0e-117 426.0 247 91.1
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.0e-117 426.0 247 91.1
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.0e-117 426.0 247 91.1
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 4.3e-117 424.9 247 89.9
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 3.9e-110 401.7 247 86.6
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 3.1e-99 365.5 246 80.9
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.9e-96 356.3 249 79.1
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 3.6e-95 352.1 253 77.9
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.0e-94 350.5 250 78.0
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 6.8e-94 347.8 249 77.1
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.3e-92 343.6 253 76.7
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.7e-90 335.9 250 75.6
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.7e-90 335.9 250 75.6
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 3.7e-76 288.9 252 69.4
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.0e-73 280.8 251 67.3
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.0e-70 270.8 250 66.4
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 4.9e-68 261.9 275 60.0
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.3e-57 227.3 251 55.8
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 1.4e-54 217.2 270 53.0
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 2.3e-54 216.5 262 54.2
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 4.7e-47 192.2 172 64.0
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 6.8e-46 188.3 271 49.8
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 4.3e-32 142.5 231 40.3
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 7.3e-32 141.7 248 38.3
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 3.1e-30 136.3 212 41.5
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 4.0e-30 136.0 180 46.1
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 5.3e-30 135.6 222 43.2
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 5.8e-29 132.1 226 40.3
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 7.6e-29 131.7 193 45.6
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 9.9e-29 131.3 199 44.2
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.7e-28 130.6 168 47.0
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 3.8e-28 129.4 199 43.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.4e-27 127.5 235 39.1
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.9e-27 127.1 181 43.1
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.9e-27 127.1 230 41.3
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 5.5e-27 125.6 223 40.4
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 5.5e-27 125.6 201 42.8
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.1e-27 125.2 215 39.5
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.3e-27 124.8 253 37.5
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 9.3e-27 124.8 186 44.1
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 1.2e-26 124.4 200 42.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 7.9e-26 121.7 179 44.1
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 7.9e-26 121.7 185 42.2
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.0e-25 121.3 171 44.4
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.0e-25 121.3 171 44.4
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.0e-25 121.3 182 42.3
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 1.0e-25 121.3 183 44.3
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.3e-25 120.9 252 40.9
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 3.9e-25 119.4 220 39.5
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 5.1e-25 119.0 234 35.5
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 5.1e-25 119.0 224 38.4
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.9e-24 117.1 142 49.3
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.9e-24 117.1 214 39.3
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 4.3e-24 115.9 237 38.8
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 2.1e-23 113.6 198 39.9
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 6.2e-23 112.1 199 39.2
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 3.1e-22 109.8 281 35.6
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 2.0e-21 107.1 155 41.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.0e-21 107.1 155 41.9
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 5.8e-21 105.5 183 39.3
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 1.0e-20 104.8 222 36.0
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.7e-20 104.0 243 34.6
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 2.2e-20 103.6 232 36.2
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.2e-20 103.6 160 40.0
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 2.9e-20 103.2 200 44.5
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.9e-20 103.2 169 37.9
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 2.9e-20 103.2 170 40.0
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 3.8e-20 102.8 184 39.7
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 8.4e-20 101.7 179 40.2
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 8.4e-20 101.7 166 39.2
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.4e-19 100.9 196 36.2
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 3.2e-19 99.8 201 36.3
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.2e-18 97.8 196 37.2
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.2e-18 97.8 196 37.2
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.6e-18 97.4 152 39.5
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.6e-18 97.4 180 37.2
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 2.1e-18 97.1 158 36.7
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 3.5e-18 96.3 158 42.4
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 4.6e-18 95.9 152 38.8
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.3e-17 94.4 141 44.7
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.3e-17 94.4 196 36.7
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.3e-17 93.6 222 33.8
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 3.0e-17 93.2 177 38.4
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 3.9e-17 92.8 185 37.8
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.9e-17 92.8 219 36.1
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.1e-16 91.3 222 33.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.1e-16 91.3 229 34.5
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.5e-16 90.9 174 36.8
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 5.7e-16 89.0 225 35.6
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.7e-16 89.0 106 48.1
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.7e-16 89.0 166 39.2
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 5.7e-16 89.0 164 37.8
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.4e-16 88.6 107 46.7
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 2.8e-15 86.7 129 42.6
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.8e-15 86.7 201 36.8
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 3.7e-15 86.3 147 40.1
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 6.3e-15 85.5 65 66.2
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 6.3e-15 85.5 152 37.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 1.1e-14 84.7 238 32.4
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.4e-14 84.3 222 31.5
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.8e-14 84.0 195 39.0
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 2.4e-14 83.6 150 37.3
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 3.1e-14 83.2 163 35.0
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-14 83.2 189 36.5
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-14 83.2 189 36.5
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-14 83.2 189 36.5
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-14 83.2 189 36.5
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.1e-14 82.8 169 35.5
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 4.1e-14 82.8 144 38.2
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 5.3e-14 82.4 150 36.0
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 5.3e-14 82.4 150 36.0
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 6.9e-14 82.0 158 36.1
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.0e-13 80.5 150 37.3
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 2.6e-13 80.1 142 39.4
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.7e-12 77.4 136 41.9
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 2.2e-12 77.0 144 36.8
BolC3t17090H Brassica oleracea HOM05D000430 ORTHO05D000305 2.9e-12 76.6 58 65.5
C03p48090 Brassica napus HOM05D000430 ORTHO05D000305 1.9e-11 73.9 56 66.1
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-10 71.2 189 34.4
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.6e-10 70.9 105 41.9
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 2.7e-10 70.1 153 37.9
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 4.6e-10 69.3 185 32.4
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.9e-10 68.6 181 32.0
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-09 67.8 187 33.2
C04p72400 Brassica napus HOM05D000250 ORTHO05D015314 2.3e-09 67.0 64 59.4
BolC4t28726H Brassica oleracea HOM05D000250 ORTHO05D015314 2.3e-09 67.0 64 59.4
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-09 67.0 181 32.0
C08p46310 Brassica napus HOM05D000250 ORTHO05D015314 3.9e-09 66.2 74 50.0
BolC8t52180H Brassica oleracea HOM05D000250 ORTHO05D015314 3.9e-09 66.2 74 50.0
C05p26340 Brassica napus HOM05D005305 ORTHO05D015314 5.1e-09 65.9 74 48.6
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.7e-09 65.1 183 31.7
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 8.7e-09 65.1 129 35.7
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.1e-08 64.7 162 30.2
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.5e-08 64.3 149 34.2
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 2.5e-08 63.5 153 34.0
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 2.5e-08 63.5 109 40.4
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.3e-08 63.2 109 40.4
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 5.7e-08 62.4 134 32.8
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 7.4e-08 62.0 140 35.0
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 9.7e-08 61.6 164 29.3
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.6e-07 60.8 120 40.8
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 1.6e-07 60.8 158 28.5
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 2.2e-07 60.5 155 36.1
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.8e-07 60.1 159 30.2
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 2.8e-07 60.1 136 30.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 3.7e-07 59.7 131 35.1
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 4.8e-07 59.3 143 29.4
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 8.2e-07 58.5 146 29.5
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.1e-06 58.2 133 35.3
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.4e-06 57.8 110 38.2
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.4e-06 57.8 117 37.6
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.8e-06 57.4 104 35.6
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 2.4e-06 57.0 117 37.6
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-06 57.0 117 37.6
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-06 57.0 117 37.6
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 2.4e-06 57.0 145 33.1
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 3.1e-06 56.6 165 29.1
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 3.1e-06 56.6 146 30.1
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-06 56.6 72 48.6
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 4.1e-06 56.2 166 35.5
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 4.1e-06 56.2 147 30.6
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 4.1e-06 56.2 147 30.6
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 4.1e-06 56.2 180 32.2
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 5.3e-06 55.8 142 35.9
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 6.9e-06 55.5 127 36.2
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 6.9e-06 55.5 125 36.0
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.9e-06 55.5 100 37.0
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.9e-06 55.5 115 34.8
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 6.9e-06 55.5 151 28.5
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 9.0e-06 55.1 145 31.0
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 9.0e-06 55.1 131 30.5
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 9.0e-06 55.1 180 30.0


User provided reference genes

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