Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-147 526.2 263 100.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.8e-95 352.1 246 74.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-94 350.1 248 75.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-94 349.4 248 75.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.5e-94 349.4 248 75.0
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 9.4e-94 347.4 247 73.7
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.7e-93 345.9 241 74.7
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.7e-93 345.9 241 74.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.0e-92 344.0 248 71.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.7e-90 336.7 248 70.2
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-89 333.6 244 71.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.8e-89 333.2 252 69.4
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.1e-89 332.0 246 70.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.1e-89 332.0 244 70.9
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 5.3e-89 331.6 246 71.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.9e-87 325.9 245 70.6
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.8e-87 325.5 244 69.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.5e-87 324.7 247 70.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 8.5e-87 324.3 247 68.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.2e-86 322.0 248 69.4
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 4.7e-85 318.5 245 67.3
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 6.1e-85 318.2 242 67.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.5e-83 313.5 272 64.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 7.5e-75 284.6 238 61.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.3e-74 281.2 241 60.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-72 276.9 246 57.3
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.9e-62 243.4 229 53.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 6.8e-60 235.0 241 48.5
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 2.6e-59 233.0 235 51.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.4e-59 232.6 237 48.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 9.8e-59 231.1 253 46.6
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.3e-58 230.7 228 49.1
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.7e-58 229.2 237 48.5
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 6.4e-58 228.4 220 51.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-57 227.6 262 44.3
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.1e-57 227.6 239 46.4
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.1e-57 227.6 223 52.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.1e-57 227.6 244 47.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.8e-57 226.9 236 50.4
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.8e-57 226.9 242 47.5
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.4e-57 226.5 245 47.3
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.4e-57 226.5 234 50.4
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.2e-57 226.1 237 48.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.1e-57 225.7 235 50.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.1e-57 225.7 247 47.4
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.6e-56 223.8 221 49.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.6e-56 223.8 257 44.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.0e-56 223.4 236 47.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.6e-56 222.2 244 45.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 6.0e-56 221.9 222 49.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.0e-55 221.1 239 47.3
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.3e-55 219.9 252 44.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.0e-55 219.5 224 49.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.0e-55 218.8 246 47.2
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.6e-55 218.4 231 49.8
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.6e-55 218.4 240 47.1
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 6.6e-55 218.4 244 46.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.5e-54 217.2 241 46.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 4.3e-54 215.7 239 49.0
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 5.6e-54 215.3 243 46.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.3e-54 214.9 218 48.2
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.6e-53 213.8 246 45.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.6e-53 213.8 247 46.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.8e-53 213.0 239 46.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.8e-53 213.0 222 45.9
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.6e-53 212.6 233 47.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.6e-53 212.6 226 47.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.7e-53 212.2 222 47.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 8.0e-53 211.5 237 46.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 8.0e-53 211.5 233 47.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 8.0e-53 211.5 223 46.6
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.4e-52 210.7 223 48.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.8e-52 210.3 245 46.5
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.2e-51 207.6 239 43.9
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.2e-51 207.6 218 46.8
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.6e-51 206.5 253 47.4
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.4e-51 205.7 241 45.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.8e-51 205.3 246 43.5
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.7e-50 203.8 223 46.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.9e-50 202.2 223 45.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.1e-49 201.1 227 45.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.1e-49 201.1 214 46.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.4e-49 200.7 227 44.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.9e-49 200.3 200 48.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.2e-49 199.5 224 46.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 4.1e-49 199.1 263 41.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 9.2e-49 198.0 241 43.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 9.2e-49 198.0 231 44.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.5e-48 196.1 241 44.0
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.5e-48 196.1 231 44.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.6e-48 195.7 203 48.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.3e-47 193.4 220 47.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-46 191.0 235 43.4
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-46 191.0 245 39.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-46 190.3 216 45.8
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-46 189.9 229 40.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.3e-46 189.5 245 38.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.2e-45 187.6 202 49.5
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.1e-45 186.8 216 45.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.8e-45 186.4 240 39.2
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.7e-45 185.7 267 39.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.2e-45 185.3 239 43.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 6.8e-44 181.8 184 45.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.2e-43 181.0 214 42.1
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 4.4e-43 179.1 222 42.3
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.4e-41 174.1 224 42.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.9e-41 173.7 221 41.6
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.4e-41 173.3 219 42.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.4e-41 173.3 198 46.5
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.2e-41 172.9 216 45.4
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 5.4e-41 172.2 208 41.8
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 7.1e-41 171.8 222 41.0
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 9.2e-41 171.4 226 42.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 7.8e-40 168.3 238 42.4
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.3e-39 167.5 231 43.3
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 3.9e-39 166.0 179 48.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.1e-39 165.6 196 41.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.3e-38 161.8 248 39.1
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.4e-36 156.8 245 38.8
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.0e-35 153.7 143 49.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.4e-35 152.9 241 39.8
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.4e-35 152.9 241 39.8
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 4.4e-35 152.5 239 36.0
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 7.8e-32 141.7 133 51.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.7e-31 140.6 212 35.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 3.0e-31 139.8 228 34.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 5.1e-31 139.0 141 48.2
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.6e-31 138.7 285 34.7
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.9e-26 123.2 177 42.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.4e-25 120.9 156 39.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 4.8e-21 105.9 81 51.9
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-20 103.6 49 91.8
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 3.1e-20 103.2 56 83.9
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 6.9e-20 102.1 87 48.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.9e-18 95.9 56 62.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.4e-18 95.5 115 47.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.3e-15 87.8 94 44.7
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.3e-15 87.0 61 54.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.1e-15 85.9 73 49.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.5e-14 83.6 56 60.7
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.0e-12 75.1 98 45.9
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 8.4e-10 68.6 95 43.2
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-09 68.2 95 41.1
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.6e-08 64.3 172 29.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.8e-07 60.8 65 44.6
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 6.7e-07 58.9 167 27.5
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.3e-06 56.6 80 40.0


User provided reference genes

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