Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-43 179.5 89 100.0
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.9e-38 162.2 89 87.6
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.9e-38 162.2 89 87.6
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.9e-38 162.2 89 87.6
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 3.6e-37 157.9 89 85.4
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 3.6e-37 157.9 89 85.4
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 3.0e-36 154.8 94 85.1
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.0e-35 152.1 94 84.0
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 4.4e-35 151.0 94 83.0
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 4.4e-35 151.0 94 84.0
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 7.4e-35 150.2 94 79.8
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 7.4e-35 150.2 94 79.8
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 8.2e-34 146.7 94 83.0
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-33 146.4 77 94.8
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.1e-33 146.4 77 94.8
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-33 146.0 77 93.5
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.8e-33 145.6 94 81.9
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.2e-32 142.9 94 80.9
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.6e-32 141.7 94 78.7
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 5.9e-32 140.6 76 92.1
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 5.9e-32 140.6 76 92.1
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-31 139.0 76 92.1
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 2.2e-31 138.7 76 90.8
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.5e-30 134.0 94 75.5
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 9.4e-30 133.3 94 74.5
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.7e-29 131.7 95 74.7
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 2.7e-29 131.7 95 74.7
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 8.0e-29 130.2 94 74.5
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.0e-28 129.8 95 68.4
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.8e-28 129.0 95 68.4
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.3e-28 128.6 95 73.7
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.3e-28 128.6 95 73.7
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.3e-28 128.6 95 73.7
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 6.7e-28 127.1 95 67.4
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 6.7e-28 127.1 95 66.3
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.0e-27 125.6 95 66.3
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 7.5e-27 123.6 93 65.6
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.3e-25 117.5 77 71.4
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 9.1e-25 116.7 96 65.6
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 9.1e-25 116.7 96 65.6
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 3.5e-24 114.8 96 64.6
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 3.5e-24 114.8 96 64.6
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 5.9e-24 114.0 96 63.5
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 5.9e-24 114.0 95 62.1
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.2e-22 108.2 97 62.9
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.6e-21 104.8 96 61.5
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 3.6e-21 104.8 94 60.6
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 4.7e-21 104.4 96 58.3
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 1.4e-20 102.8 92 58.7
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.4e-20 102.8 96 59.4
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.4e-20 102.8 96 59.4
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.8e-20 102.4 104 57.7
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 4.0e-20 101.3 97 57.7
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 5.2e-20 100.9 94 60.6
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 6.8e-20 100.5 97 59.8
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 8.8e-20 100.1 96 59.4
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.2e-19 99.8 97 58.8
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.2e-19 99.8 97 58.8
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.2e-19 99.8 107 54.2
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 2.0e-19 99.0 97 58.8
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 7.5e-19 97.1 104 54.8
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 7.5e-19 97.1 97 56.7
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.8e-19 96.7 103 55.3
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 9.8e-19 96.7 97 57.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 9.8e-19 96.7 97 56.7
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.3e-18 96.3 95 56.8
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.3e-18 96.3 107 55.1
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 1.7e-18 95.9 108 52.8
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.7e-18 95.9 97 55.7
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.7e-18 95.9 97 55.7
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.8e-18 95.1 97 55.7
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.8e-18 95.1 97 56.7
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.7e-18 94.7 97 56.7
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.7e-18 94.7 97 56.7
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.7e-18 94.7 107 51.4
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 4.8e-18 94.4 97 54.6
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 4.8e-18 94.4 97 55.7
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 6.3e-18 94.0 97 54.6
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 6.3e-18 94.0 97 55.7
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 6.3e-18 94.0 104 56.7
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 6.3e-18 94.0 107 53.3
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 8.3e-18 93.6 97 54.6
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 8.3e-18 93.6 97 56.7
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 8.3e-18 93.6 104 56.7
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.1e-17 93.2 107 53.3
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.1e-17 93.2 97 53.6
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.1e-17 93.2 102 55.9
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-17 93.2 97 53.6
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-17 93.2 97 53.6
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.4e-17 92.8 97 55.7
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.4e-17 92.8 92 56.5
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.8e-17 92.4 80 62.5
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.8e-17 92.4 104 52.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.8e-17 92.4 97 54.6
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.4e-17 92.0 106 52.8
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.4e-17 92.0 104 53.8
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 3.1e-17 91.7 104 54.8
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 3.1e-17 91.7 107 52.3
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.1e-17 91.7 97 52.6
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 4.1e-17 91.3 97 53.6
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 4.1e-17 91.3 97 54.6
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 5.4e-17 90.9 104 53.8
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 5.4e-17 90.9 107 53.3
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 7.0e-17 90.5 106 52.8
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 7.0e-17 90.5 107 52.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 9.1e-17 90.1 106 51.9
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 9.1e-17 90.1 97 53.6
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 9.1e-17 90.1 97 53.6
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.1e-17 90.1 102 54.9
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.2e-16 89.7 79 60.8
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.2e-16 89.7 79 59.5
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.6e-16 89.4 97 53.6
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.6e-16 89.4 97 53.6
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.0e-16 89.0 97 52.6
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.7e-16 88.6 109 48.6
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 2.7e-16 88.6 103 50.5
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 2.7e-16 88.6 104 52.9
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 3.5e-16 88.2 97 54.6
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 4.5e-16 87.8 77 62.3
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 4.5e-16 87.8 104 51.9
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 5.9e-16 87.4 94 56.4
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 7.7e-16 87.0 94 53.2
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.0e-15 86.7 105 52.4
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.0e-15 86.7 92 57.6
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 1.0e-15 86.7 107 51.4
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.7e-15 85.9 104 50.0
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 2.3e-15 85.5 104 51.0
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 2.3e-15 85.5 75 62.7
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 2.3e-15 85.5 79 55.7
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 2.3e-15 85.5 107 49.5
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 2.9e-15 85.1 97 52.6
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 8.6e-15 83.6 100 51.0
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 8.6e-15 83.6 108 49.1
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 8.6e-15 83.6 97 48.5
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.1e-14 83.2 97 54.6
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.1e-14 83.2 107 50.5
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.5e-14 82.8 103 48.5
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.5e-14 82.0 98 54.1
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.5e-14 82.0 97 52.6
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 2.5e-14 82.0 77 54.5
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 3.3e-14 81.6 100 51.0
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 3.3e-14 81.6 106 46.2
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 4.2e-14 81.3 81 59.3
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 4.2e-14 81.3 92 55.4
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 5.5e-14 80.9 101 48.5
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 5.5e-14 80.9 95 52.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 7.2e-14 80.5 85 54.1
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 9.5e-14 80.1 108 49.1
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.2e-13 79.7 96 50.0
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.2e-13 79.7 106 45.3
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.1e-13 79.0 80 57.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 2.1e-13 79.0 101 47.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 2.1e-13 79.0 97 47.4
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.8e-13 78.6 106 47.2
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.6e-13 78.2 77 51.9
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 8.0e-13 77.0 94 46.8
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.0e-12 76.6 77 51.9
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.0e-12 76.6 74 55.4
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.4e-12 76.3 77 53.2
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.3e-12 75.5 91 51.6
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 2.3e-12 75.5 85 58.8
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 3.0e-12 75.1 96 52.1
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 6.8e-12 73.9 77 53.2
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 8.9e-12 73.6 89 50.6
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 8.9e-12 73.6 107 48.6
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.2e-11 73.2 77 48.1
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.0e-11 72.4 75 49.3
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 3.4e-11 71.6 105 48.6
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 3.4e-11 71.6 70 57.1
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 4.4e-11 71.2 97 50.5
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 7.5e-11 70.5 102 45.1
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.7e-10 69.3 105 47.6
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 6.3e-10 67.4 55 65.5
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 8.3e-10 67.0 94 46.8
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 8.3e-10 67.0 80 51.2
BraA07t30345Z Brassica rapa HOM05D003613 ORTHO05D004055 5.4e-09 64.3 39 71.8
C06p29730 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-08 63.2 37 75.7
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 1.2e-08 63.2 80 45.0
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.2e-08 63.2 77 45.5
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 4.5e-08 61.2 81 48.1
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.3e-07 59.7 61 54.1
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 2.9e-07 58.5 73 50.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 5.0e-07 57.8 55 60.0
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.9e-06 55.8 49 61.2


User provided reference genes

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