Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12981 Brassica carinata HOM05D003541 ORTHO05D004095 3.6e-143 511.5 255 100.0
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 9.6e-136 486.9 240 100.0
BraA08t34973Z Brassica rapa HOM05D003541 ORTHO05D004095 5.3e-134 481.1 253 94.5
BcaNung05446 Brassica carinata HOM05D003541 ORTHO05D004095 1.2e-133 479.9 253 94.5
C08p18630 Brassica napus HOM05D003541 ORTHO05D004095 1.2e-133 479.9 253 94.5
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.2e-133 479.9 253 94.5
A08p30400 Brassica napus HOM05D003541 ORTHO05D004095 3.4e-133 478.4 253 94.1
A09p59950 Brassica napus HOM05D003541 ORTHO05D004095 2.5e-131 472.2 251 92.0
BraA09t41366Z Brassica rapa HOM05D003541 ORTHO05D004095 2.5e-131 472.2 251 92.0
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 7.1e-131 470.7 251 91.6
C08p43390 Brassica napus HOM05D003541 ORTHO05D004095 2.1e-130 469.2 251 91.2
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 2.1e-130 469.2 251 91.2
Sp1g16400 Schrenkiella parvula HOM05D003541 ORTHO05D004095 2.7e-130 468.8 255 90.2
Thhalv10006963m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 3.0e-129 465.3 255 90.2
AL1G30890 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 5.8e-125 451.1 255 87.8
AT1G18460 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 1.0e-124 450.3 255 87.5
Carub.0001s1809 Capsella rubella HOM05D003541 ORTHO05D004095 3.2e-123 445.3 255 87.1
CARHR019070 Cardamine hirsuta HOM05D003541 ORTHO05D004095 6.7e-121 437.6 252 85.7
Aa31LG7G3130 Aethionema arabicum HOM05D003541 ORTHO05D004095 9.0e-118 427.2 251 83.7
A07p39770 Brassica napus HOM05D003541 ORTHO05D004095 4.6e-114 414.8 248 84.3
BraA07t31524Z Brassica rapa HOM05D003541 ORTHO05D004095 1.4e-113 413.3 248 83.9
BolC6t39839H Brassica oleracea HOM05D003541 ORTHO05D004095 6.7e-113 411.0 248 83.5
C06p48040 Brassica napus HOM05D003541 ORTHO05D004095 1.1e-112 410.2 248 83.5
QL10p023576 Quercus lobata HOM05D003541 ORTHO05D004095 2.0e-112 409.5 246 80.5
THA.LOC104812131 Tarenaya hassleriana HOM05D003541 ORTHO05D004095 2.5e-112 409.1 250 81.2
CARHR067030 Cardamine hirsuta HOM05D003541 ORTHO05D004095 4.3e-112 408.3 248 82.3
vmacro22487 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 5.7e-112 407.9 246 80.9
MD06G1212200 Malus domestica HOM05D003541 ORTHO05D004095 1.3e-111 406.8 246 80.9
Prupe.5G218200 Prunus persica HOM05D003541 ORTHO05D004095 2.8e-111 405.6 246 79.3
Thhalv10018209m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 3.7e-111 405.2 253 81.0
Carub.0002s2069 Capsella rubella HOM05D003541 ORTHO05D004095 6.3e-111 404.4 253 80.2
CSS0035183 Camellia sinensis var. sinensis HOM05D003541 ORTHO05D004095 8.2e-111 404.1 246 80.5
Ciclev10019107m.g Citrus clementina HOM05D003541 ORTHO05D004095 8.2e-111 404.1 246 80.9
PGR083G2725 Punica granatum HOM05D003541 ORTHO05D004095 1.1e-110 403.7 251 80.5
BcaB03g15736 Brassica carinata HOM05D003541 ORTHO05D004095 1.4e-110 403.3 249 81.5
MD14G1222700 Malus domestica HOM05D003541 ORTHO05D004095 1.8e-110 402.9 246 80.1
Rhsim12G0144300 Rhododendron simsii HOM05D003541 ORTHO05D004095 1.8e-110 402.9 247 78.9
Sp5g29120 Schrenkiella parvula HOM05D003541 ORTHO05D004095 2.4e-110 402.5 248 81.9
A07p29580 Brassica napus HOM05D003541 ORTHO05D004095 3.1e-110 402.1 248 81.5
C06p33740 Brassica napus HOM05D003541 ORTHO05D004095 3.1e-110 402.1 248 81.5
BolC6t38489H Brassica oleracea HOM05D003541 ORTHO05D004095 3.1e-110 402.1 248 81.5
BraA07t30599Z Brassica rapa HOM05D003541 ORTHO05D004095 3.1e-110 402.1 248 81.5
Haze_18628 Corylus avellana HOM05D003541 ORTHO05D004095 3.1e-110 402.1 246 79.3
AL2G33750 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 4.1e-110 401.7 253 79.4
Dinv07364 Davidia involucrata HOM05D003541 ORTHO05D004095 6.9e-110 401.0 246 79.3
AT1G73920 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 9.1e-110 400.6 248 80.6
BcaC08g45614 Brassica carinata HOM05D003541 ORTHO05D004095 9.1e-110 400.6 251 80.5
CANSAT80G0782 Cannabis sativa HOM05D003541 ORTHO05D004095 9.1e-110 400.6 254 78.3
COL.COLO4_16239 Corchorus olitorius HOM05D003541 ORTHO05D004095 1.5e-109 399.8 246 78.9
Hma1.2p1_0340F.1_g129780 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 1.5e-109 399.8 246 79.3
RcHm_v2.0_Chr7g0184731 Rosa chinensis HOM05D003541 ORTHO05D004095 1.5e-109 399.8 246 79.3
Thecc.03G029700 Theobroma cacao HOM05D003541 ORTHO05D004095 4.5e-109 398.3 246 78.5
FvH4_5g12600 Fragaria vesca HOM05D003541 ORTHO05D004095 5.9e-109 397.9 246 78.0
FAN18G0309 Fragaria x ananassa HOM05D003541 ORTHO05D004095 5.9e-109 397.9 246 78.0
Atru.chr9.784 Acer truncatum HOM05D003541 ORTHO05D004095 1.7e-108 396.4 246 78.5
FAN18G3376 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.7e-108 396.4 246 77.6
FAN08G0854 Fragaria x ananassa HOM05D003541 ORTHO05D004095 6.5e-108 394.4 246 77.2
Oeu024322.1 Olea europaea HOM05D003541 ORTHO05D004095 6.5e-108 394.4 251 76.5
Eucgr.K02663 Eucalyptus grandis HOM05D003541 ORTHO05D004095 8.5e-108 394.0 250 75.2
Lj4g0015559 Lotus japonicus HOM05D003541 ORTHO05D004095 8.5e-108 394.0 252 76.6
TWI15G0244 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 8.5e-108 394.0 246 78.5
Glyma.05G232700 Glycine max HOM05D003541 ORTHO05D004095 1.1e-107 393.7 246 76.8
Aa31LG4G4210 Aethionema arabicum HOM05D003541 ORTHO05D004095 2.5e-107 392.5 253 77.5
Hma1.2p1_3191F.1_g333810 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 2.5e-107 392.5 251 76.5
Ah.11g047040 Amaranthus hybridus HOM05D003541 ORTHO05D004095 3.2e-107 392.1 247 76.5
FAN04G2140 Fragaria x ananassa HOM05D003541 ORTHO05D004095 3.2e-107 392.1 246 76.8
MBI09_g04371_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 7.2e-107 391.0 247 76.9
TWI81G0124 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 7.2e-107 391.0 245 79.2
Ca_17344_v3 Cicer arietinum L. HOM05D003541 ORTHO05D004095 1.2e-106 390.2 253 74.7
AUR62036965 Chenopodium quinoa HOM05D003541 ORTHO05D004095 2.7e-106 389.0 231 80.1
CiPaw.16G084500 Carya illinoinensis HOM05D003541 ORTHO05D004095 3.6e-106 388.7 251 76.9
AUR62032198 Chenopodium quinoa HOM05D003541 ORTHO05D004095 3.6e-106 388.7 231 80.1
TAR371G0923 Trochodendron aralioides HOM05D003541 ORTHO05D004095 3.6e-106 388.7 246 76.4
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.7e-106 388.3 231 81.4
Eucgr.B00703 Eucalyptus grandis HOM05D003541 ORTHO05D004095 6.1e-106 387.9 248 77.0
MSTRG.11321 Avicennia marina HOM05D003541 ORTHO05D004095 1.0e-105 387.1 246 76.0
Medtr8g103850 Medicago truncatula HOM05D003541 ORTHO05D004095 1.0e-105 387.1 248 75.8
Actinidia35078 Actinidia chinensis HOM05D003541 ORTHO05D004095 1.4e-105 386.7 246 76.4
Lsat_1_v5_gn_4_115841 Lactuca sativa HOM05D003541 ORTHO05D004095 3.9e-105 385.2 246 77.2
Lj2g0005362 Lotus japonicus HOM05D003541 ORTHO05D004095 3.9e-105 385.2 246 77.6
Psat7g012440 Pisum sativum HOM05D003541 ORTHO05D004095 3.9e-105 385.2 246 76.8
EL10Ac5g11259 Beta vulgaris HOM05D003541 ORTHO05D004095 5.1e-105 384.8 231 78.8
Hund02522 Selenicereus undatus HOM05D003541 ORTHO05D004095 6.7e-105 384.4 252 73.0
Duzib068G0226 Durio zibethinus HOM05D003541 ORTHO05D004095 8.8e-105 384.0 250 72.4
HanXRQChr09g0269901 Helianthus annuus HOM05D003541 ORTHO05D004095 8.8e-105 384.0 246 76.8
TPR.G21707 Trifolium pratense HOM05D003541 ORTHO05D004095 8.8e-105 384.0 246 75.2
Lj5C146G11 Lonicera japonica HOM05D003541 ORTHO05D004095 1.1e-104 383.6 246 76.8
Nitab4.5_0001599g0130 Nicotiana tabacum HOM05D003541 ORTHO05D004095 2.0e-104 382.9 253 74.7
Aqoxy3G03927 Aquilegia oxysepala HOM05D003541 ORTHO05D004095 3.3e-104 382.1 251 75.7
ECA232G0305 Erigeron canadensis HOM05D003541 ORTHO05D004095 3.3e-104 382.1 246 76.0
Manes.01G020100 Manihot esculenta HOM05D003541 ORTHO05D004095 3.3e-104 382.1 248 75.0
PGSC0003DMG400005709 Solanum tuberosum HOM05D003541 ORTHO05D004095 3.3e-104 382.1 246 76.0
Cc04_g07430 Coffea canephora HOM05D003541 ORTHO05D004095 4.4e-104 381.7 245 76.3
Glyma.09G187400 Glycine max HOM05D003541 ORTHO05D004095 4.4e-104 381.7 250 75.2
Phvul.004G160400 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 4.4e-104 381.7 250 75.2
Nitab4.5_0000410g0010 Nicotiana tabacum HOM05D003541 ORTHO05D004095 5.7e-104 381.3 252 74.6
Potri.012G060600 Populus trichocarpa HOM05D003541 ORTHO05D004095 1.3e-103 380.2 246 76.0
Hund10017 Selenicereus undatus HOM05D003541 ORTHO05D004095 1.3e-103 380.2 242 76.0
Solyc03g119720.4 Solanum lycopersicum HOM05D003541 ORTHO05D004095 1.3e-103 380.2 246 75.2
Peaxi162Scf00015g00839 Petunia axillaris HOM05D003541 ORTHO05D004095 2.8e-103 379.0 253 75.9
Phvul.002G315000 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 4.8e-103 378.3 247 74.5
SalBow5G5009 Salvia bowleyana HOM05D003541 ORTHO05D004095 4.8e-103 378.3 246 74.4
Sc04g0003690 Simmondsia chinensis HOM05D003541 ORTHO05D004095 4.8e-103 378.3 253 72.3
arahy.Tifrunner.gnm1.ann1.5B91PZ Arachis hypogaea HOM05D003541 ORTHO05D004095 6.3e-103 377.9 253 73.1
Migut.I00385 Erythranthe guttata HOM05D003541 ORTHO05D004095 6.3e-103 377.9 254 74.4
Sopen03g038560 Solanum pennellii HOM05D003541 ORTHO05D004095 8.2e-103 377.5 246 74.8
HPP92_024716 Vanilla planifolia HOM05D003541 ORTHO05D004095 8.2e-103 377.5 232 78.0
GSVIVG01008249001 Vitis vinifera HOM05D003541 ORTHO05D004095 1.4e-102 376.7 238 76.9
Lalb_Chr05g0222641 Lupinus albus HOM05D003541 ORTHO05D004095 1.8e-102 376.3 246 74.8
PGSC0003DMG400004445 Solanum tuberosum HOM05D003541 ORTHO05D004095 1.8e-102 376.3 245 75.5
Zm00001eb132660 Zea mays HOM05D003541 ORTHO05D004095 1.8e-102 376.3 256 72.7
Glyma.07G089400 Glycine max HOM05D003541 ORTHO05D004095 2.4e-102 375.9 250 74.0
DCAR_023188 Daucus carota HOM05D003541 ORTHO05D004095 4.1e-102 375.2 246 74.4
arahy.Tifrunner.gnm1.ann1.Q237M7 Arachis hypogaea HOM05D003541 ORTHO05D004095 5.3e-102 374.8 248 73.0
arahy.Tifrunner.gnm1.ann1.SXG9J3 Arachis hypogaea HOM05D003541 ORTHO05D004095 5.3e-102 374.8 253 72.7
Os01g0521400 Oryza sativa ssp. japonica HOM05D003541 ORTHO05D004095 5.3e-102 374.8 254 70.9
Nn3g17767 Nelumbo nucifera HOM05D003541 ORTHO05D004095 9.1e-102 374.0 248 75.4
Gorai.007G007200 Gossypium raimondii HOM05D003541 ORTHO05D004095 1.2e-101 373.6 246 73.2
Lalb_Chr22g0352971 Lupinus albus HOM05D003541 ORTHO05D004095 1.5e-101 373.2 230 77.4
PSO063G0435 Papaver somniferum HOM05D003541 ORTHO05D004095 2.0e-101 372.9 246 74.4
Sopen12g017870 Solanum pennellii HOM05D003541 ORTHO05D004095 2.6e-101 372.5 245 75.5
Gohir.D11G006000 Gossypium hirsutum HOM05D003541 ORTHO05D004095 3.5e-101 372.1 246 72.8
Psat1g039360 Pisum sativum HOM05D003541 ORTHO05D004095 3.5e-101 372.1 229 78.2
Gohir.A11G006900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 4.5e-101 371.7 246 72.8
VMungo0251G0053 Vigna mungo HOM05D003541 ORTHO05D004095 4.5e-101 371.7 234 75.2
PSO782G5001 Papaver somniferum HOM05D003541 ORTHO05D004095 5.9e-101 371.3 246 74.0
CAN.G438.122 Capsicum annuum HOM05D003541 ORTHO05D004095 7.7e-101 370.9 246 74.4
VMungo0464G0349 Vigna mungo HOM05D003541 ORTHO05D004095 7.7e-101 370.9 250 73.2
Nitab4.5_0002043g0080 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.0e-100 370.5 245 74.7
Peaxi162Scf00804g00007 Petunia axillaris HOM05D003541 ORTHO05D004095 1.3e-100 370.2 232 78.0
Nitab4.5_0000208g0180 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.7e-100 369.8 245 75.1
Sed0001727 Sechium edule HOM05D003541 ORTHO05D004095 2.2e-100 369.4 247 71.3
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.2e-100 369.4 255 71.4
Solyc12g038160.2 Solanum lycopersicum HOM05D003541 ORTHO05D004095 2.2e-100 369.4 245 74.7
TPR.G31445 Trifolium pratense HOM05D003541 ORTHO05D004095 3.8e-100 368.6 248 71.8
PGR044G0196 Punica granatum HOM05D003541 ORTHO05D004095 6.5e-100 367.9 246 71.5
Medtr6g085070 Medicago truncatula HOM05D003541 ORTHO05D004095 1.1e-99 367.1 253 71.5
ClCG04G011250 Citrullus lanatus HOM05D003541 ORTHO05D004095 1.5e-99 366.7 245 70.6
Lalb_Chr14g0371311 Lupinus albus HOM05D003541 ORTHO05D004095 3.2e-99 365.5 242 74.0
Manes.05G138900 Manihot esculenta HOM05D003541 ORTHO05D004095 5.5e-99 364.8 246 72.8
CsaV3_1G006500 Cucumis sativus L. HOM05D003541 ORTHO05D004095 1.6e-98 363.2 248 71.8
Sed0000678 Sechium edule HOM05D003541 ORTHO05D004095 1.6e-98 363.2 253 69.6
DCAR_011345 Daucus carota HOM05D003541 ORTHO05D004095 2.1e-98 362.8 244 73.0
SGA_v2.0_scaffold19G08810 Striga asiatica HOM05D003541 ORTHO05D004095 4.7e-98 361.7 230 78.3
HanXRQChr16g0501761 Helianthus annuus HOM05D003541 ORTHO05D004095 1.0e-97 360.5 230 74.8
Nn4g23755 Nelumbo nucifera HOM05D003541 ORTHO05D004095 1.4e-97 360.1 225 76.9
MELO3C002077.2 Cucumis melo HOM05D003541 ORTHO05D004095 2.3e-97 359.4 249 69.9
Lsat_1_v5_gn_5_25181 Lactuca sativa HOM05D003541 ORTHO05D004095 1.3e-95 353.6 245 71.4
MBI16_g06256_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 4.8e-95 351.7 230 72.6
Dinv40426 Davidia involucrata HOM05D003541 ORTHO05D004095 6.3e-95 351.3 209 79.4
ECA246G2878 Erigeron canadensis HOM05D003541 ORTHO05D004095 1.1e-94 350.5 248 71.0
SHI30433 Sapria himalayana HOM05D003541 ORTHO05D004095 1.4e-94 350.1 226 77.4
HanXRQChr05g0152881 Helianthus annuus HOM05D003541 ORTHO05D004095 4.1e-94 348.6 248 70.2
CDE04G1171 Ceratophyllum demersum HOM05D003541 ORTHO05D004095 3.5e-93 345.5 225 74.7
Cpa.g.sc13.27 Carica papaya HOM05D003541 ORTHO05D004095 5.5e-91 338.2 248 70.6
ATR0681G201 Amborella trichopoda HOM05D003541 ORTHO05D004095 2.7e-90 335.9 230 70.4
Gorai.007G007100 Gossypium raimondii HOM05D003541 ORTHO05D004095 8.0e-90 334.3 251 63.3
Gohir.A11G006800 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.0e-89 334.0 251 63.3
SEGI_10894 Sequoiadendron giganteum HOM05D003541 ORTHO05D004095 6.8e-89 331.3 251 63.7
DCAR_011547 Daucus carota HOM05D003541 ORTHO05D004095 4.4e-88 328.6 246 66.7
SGA_v2.0_scaffold25G10984 Striga asiatica HOM05D003541 ORTHO05D004095 5.7e-88 328.2 228 71.1
SMO164G0035 Selaginella moellendorffii HOM05D003541 ORTHO05D004095 9.1e-86 320.9 235 64.3
Pp3c8_18170 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.6e-85 320.1 249 63.5
Pp3c20_9110 Physcomitrium patens HOM05D003541 ORTHO05D004095 4.5e-85 318.5 234 62.4
Glyma.08G040100 Glycine max HOM05D003541 ORTHO05D004095 5.7e-80 301.6 194 73.7
Mapoly0004s0087 Marchantia polymorpha HOM05D003541 ORTHO05D004095 1.3e-79 300.4 234 59.8
Pp3c18_6270 Physcomitrium patens HOM05D003541 ORTHO05D004095 3.5e-77 292.4 230 60.0
Pp3c19_13160 Physcomitrium patens HOM05D003541 ORTHO05D004095 8.0e-74 281.2 230 57.4
Gohir.D11G005950 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.2e-66 257.3 188 64.9
vmacro16455 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 2.3e-65 253.1 232 59.9
BcaC07g37849 Brassica carinata HOM05D003541 ORTHO05D004095 1.1e-62 244.2 228 61.0
CBR_g165 Chara braunii HOM05D003541 ORTHO05D004095 5.4e-62 241.9 228 50.4
A08p11440 Brassica napus HOM05D003541 ORTHO05D004095 9.5e-59 231.1 228 58.8
BolC8t48238H Brassica oleracea HOM05D003541 ORTHO05D004095 4.4e-56 222.2 204 61.8
unitig_699.g19435 Utricularia gibba HOM05D003541 ORTHO05D004095 7.6e-48 194.9 138 69.6
Cre12.g541352 Chlamydomonas reinhardtii HOM05D003541 ORTHO05D004095 3.2e-38 162.9 231 41.1
unitig_699.g19434 Utricularia gibba HOM05D003541 ORTHO05D004095 3.3e-35 152.9 93 78.5
BraA08t33137Z Brassica rapa HOM05D003541 ORTHO05D004095 3.6e-34 149.4 97 75.3
AagrBONN_evm.TU.Sc2ySwM_362.2699 Anthoceros agrestis HOM05D003541 ORTHO05D004095 3.1e-33 146.4 103 67.0
PRCOL_00007282 Prasinoderma coloniale HOM05D003541 ORTHO05D004095 4.0e-33 146.0 230 37.4
CAN.G841.19 Capsicum annuum HOM05D003541 ORTHO05D004095 2.5e-27 126.7 86 69.8
CAN.G150.11 Capsicum annuum HOM05D003541 ORTHO05D004095 5.8e-16 89.0 60 68.3
BraA08t33138Z Brassica rapa HOM05D003541 ORTHO05D107385 3.7e-10 69.7 42 83.3


User provided reference genes

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