Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 0.0e+00 1617.8 799 100.0
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1391.3 835 83.8
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1383.2 834 83.5
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1377.1 833 83.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1376.3 832 84.9
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 0.0e+00 1355.1 837 81.8
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 0.0e+00 1278.5 835 79.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1266.1 824 77.3
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1257.7 818 77.8
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1257.7 818 77.8
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1250.3 823 76.9
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 0.0e+00 1210.7 808 77.7
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 0.0e+00 1209.9 831 74.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 0.0e+00 1202.6 830 73.6
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 0.0e+00 1082.0 836 66.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.7e-308 1062.4 710 75.4
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 5.1e-276 954.5 846 59.2
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.0e-223 780.8 841 50.5
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.3e-223 780.4 872 50.7
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 6.3e-218 761.5 869 49.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.4e-217 759.6 863 49.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.5e-216 755.7 878 49.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.3e-215 753.8 887 48.6
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 6.6e-215 751.5 869 48.4
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.0e-211 740.0 867 48.1
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 5.7e-211 738.4 1013 43.6
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 7.0e-209 731.5 888 48.2
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.2e-208 730.7 897 46.6
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.9e-206 723.4 832 47.4
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.5e-206 723.0 926 45.1
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.6e-205 719.2 876 46.1
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 3.2e-201 706.1 821 47.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 2.0e-200 703.4 741 51.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.9e-198 696.8 807 47.5
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 9.5e-198 694.5 868 46.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.8e-196 690.3 843 47.0
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.2e-195 687.6 897 45.7
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.2e-194 683.3 887 43.1
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.6e-192 675.6 995 41.2
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.1e-190 671.0 968 41.8
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 1.5e-190 670.6 875 45.6
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 4.7e-189 665.6 932 42.2
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.4e-188 664.1 1021 41.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.1e-188 662.9 1000 41.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.7e-184 649.8 1061 38.5
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 4.6e-184 649.0 964 39.9
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.7e-183 647.1 911 42.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 5.1e-183 645.6 852 43.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.6e-181 640.6 765 46.3
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.6e-181 640.6 1063 38.0
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 4.7e-181 639.0 907 42.3
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.1e-180 637.9 875 43.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 4.0e-180 636.0 891 40.9
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-179 634.4 907 42.6
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.5e-179 634.0 901 42.4
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.5e-179 634.0 887 42.2
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 4.9e-178 629.0 713 48.2
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.9e-177 627.1 1057 37.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 9.3e-177 624.8 945 41.3
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.1e-176 623.6 928 41.5
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.0e-175 619.8 938 41.3
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.0e-175 619.8 938 41.3
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.5e-174 617.5 1072 37.3
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 4.3e-174 615.9 1016 38.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.6e-173 614.0 1063 37.0
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.1e-173 613.6 917 40.3
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.8e-173 613.2 1037 37.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 6.2e-173 612.1 1021 39.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.8e-172 610.5 1016 36.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 9.0e-172 608.2 970 40.8
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.3e-170 604.4 1054 36.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 9.3e-169 598.2 1086 35.6
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 2.1e-168 597.0 948 41.9
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.7e-168 596.7 892 41.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.0e-167 593.2 973 37.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.9e-166 590.5 831 41.8
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 2.5e-166 590.1 797 43.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.5e-166 590.1 896 39.2
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.8e-165 586.6 901 39.0
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 3.1e-164 583.2 1007 37.5
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.4e-163 579.7 890 40.9
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-162 577.8 1031 37.9
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 9.3e-161 571.6 799 43.6
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.0e-159 566.6 1127 34.3
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.1e-158 564.7 1062 35.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.4e-156 557.0 906 40.0
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 2.2e-154 550.4 517 53.4
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.4e-153 547.7 1004 35.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.2e-153 546.2 817 43.6
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.2e-153 546.2 1083 35.3
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 4.2e-153 546.2 844 38.4
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.3e-151 541.2 908 38.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 4.3e-150 536.2 924 37.2
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.5e-147 526.2 803 40.5
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.1e-145 521.5 615 45.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 9.3e-145 518.5 726 43.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.6e-144 517.7 1077 34.6
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 7.4e-142 508.8 792 37.9
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.2e-139 501.5 492 52.0
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.0e-134 484.2 473 53.9
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 6.3e-133 479.2 774 37.9
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.4e-132 478.0 474 50.2
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-124 451.8 804 36.9
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.1e-121 441.8 935 33.6
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 2.0e-115 421.0 640 41.9
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.5e-113 414.8 619 41.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.9e-113 414.5 516 42.6
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.2e-110 405.2 677 39.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.7e-109 401.4 312 59.3
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.3e-103 380.9 479 43.8
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.3e-101 375.2 707 33.8
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 8.3e-101 372.5 316 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 7.8e-99 365.9 711 35.0
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 7.3e-97 359.4 756 32.0
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.0e-70 271.6 536 33.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.9e-69 267.7 294 49.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.8e-55 221.9 287 42.5
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.0e-54 218.4 661 28.4
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.3e-53 215.7 228 50.4
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.2e-51 209.1 293 43.7
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.3e-50 204.9 324 34.9
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.1e-48 196.4 234 49.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.4e-47 194.9 234 47.4
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.6e-46 191.4 407 35.4
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.4e-46 191.0 244 46.7
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.1e-44 183.3 131 62.6
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 6.9e-39 166.8 219 46.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.4e-38 164.5 212 47.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-32 145.6 218 39.9
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.4e-31 142.5 230 41.7
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.8e-31 142.1 187 40.1
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.2e-30 139.4 221 40.3
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.2e-30 139.4 218 40.4
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-29 136.3 231 45.5
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.1e-28 132.9 212 42.0
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 9.3e-28 129.8 269 35.3
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.7e-24 117.9 338 30.8
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 8.2e-24 116.7 186 36.6
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-23 115.5 103 54.4
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 3.8e-21 107.8 193 37.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.3e-16 92.8 114 46.5
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.2e-16 90.1 102 43.1
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 6.9e-15 87.0 119 44.5
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.5e-14 85.9 189 33.3
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.7e-11 74.3 100 43.0
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 6.7e-10 70.5 147 36.1
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 4.4e-09 67.8 416 22.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.7e-08 65.9 55 50.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.4e-07 62.0 40 72.5


User provided reference genes

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