Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 4.0e-166 588.2 331 100.0
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.2e-132 476.1 331 82.5
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.4e-132 474.6 328 82.6
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-131 473.0 331 82.2
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.1e-131 471.1 332 82.2
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 6.6e-129 464.5 337 80.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 2.4e-126 456.1 343 74.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 3.0e-121 439.1 343 75.2
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 4.5e-117 425.2 343 71.1
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.6e-114 416.8 343 71.1
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 6.0e-114 414.8 340 68.8
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 3.9e-113 412.1 339 69.0
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 6.2e-111 404.8 341 70.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.5e-109 400.2 337 67.4
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.7e-106 389.4 359 63.0
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 4.6e-106 388.7 340 68.8
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 6.0e-106 388.3 359 63.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.9e-96 356.7 340 60.0
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.8e-79 298.9 342 52.9
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-75 287.7 216 70.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.6e-74 283.9 338 49.7
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.7e-58 229.9 362 41.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 4.0e-57 226.1 362 40.6
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.7e-56 222.2 359 39.3
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.4e-54 216.9 359 38.4
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.4e-54 216.9 353 41.4
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.1e-54 216.1 359 38.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 9.2e-54 214.9 351 40.2
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.6e-53 214.2 366 38.3
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 3.5e-53 213.0 356 41.0
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.5e-53 212.6 367 37.9
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 4.5e-53 212.6 353 40.8
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.8e-52 209.5 376 43.1
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 8.6e-52 208.4 309 41.4
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.5e-51 207.6 349 40.1
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 9.5e-51 204.9 339 39.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.4e-49 201.1 351 40.5
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.5e-48 197.6 326 38.0
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 7.5e-48 195.3 349 39.0
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.7e-47 194.1 342 40.4
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.1e-46 191.4 363 36.1
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.4e-46 190.3 285 43.2
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.2e-46 189.9 364 37.9
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 5.9e-45 185.7 344 37.8
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 5.9e-45 185.7 364 38.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.3e-44 184.5 365 36.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.7e-44 184.1 316 38.9
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 6.6e-44 182.2 370 35.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 5.6e-43 179.1 368 35.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.6e-42 177.6 363 35.5
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.1e-42 177.2 329 36.5
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.2e-42 175.6 341 35.5
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 6.2e-42 175.6 364 36.0
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 6.2e-42 175.6 351 36.2
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.4e-41 174.5 351 34.8
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.8e-41 174.1 363 36.1
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.3e-41 173.7 342 37.1
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 3.1e-41 173.3 358 35.8
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 3.1e-41 173.3 358 35.8
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 5.2e-41 172.6 332 41.0
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 5.2e-41 172.6 358 35.5
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 8.9e-41 171.8 350 35.4
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.5e-40 171.0 203 47.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 3.4e-40 169.9 365 33.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 5.8e-40 169.1 346 35.5
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 9.8e-40 168.3 357 35.0
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.7e-39 167.5 336 35.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 6.4e-39 165.6 381 34.4
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.2e-38 163.3 375 37.9
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 5.4e-38 162.5 345 34.2
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 7.0e-38 162.2 367 32.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.6e-37 161.0 352 37.8
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.0e-37 160.6 366 33.9
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 3.5e-37 159.8 368 37.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.0e-36 158.3 404 32.9
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 1.7e-36 157.5 134 64.9
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.3e-36 157.1 359 32.6
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.0e-36 156.8 345 33.3
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 3.9e-36 156.4 363 32.0
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 8.6e-36 155.2 353 33.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.1e-35 154.8 375 33.3
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-35 154.5 368 32.1
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.3e-35 153.3 366 38.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.3e-35 152.9 365 35.3
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.2e-34 151.4 374 31.8
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.6e-34 151.0 334 35.3
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.2e-34 149.1 307 31.6
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 6.2e-34 149.1 327 33.0
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.0e-33 146.4 309 36.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 4.0e-33 146.4 250 36.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.2e-33 146.0 324 34.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.2e-32 144.8 354 31.6
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 7.5e-32 142.1 334 34.1
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 7.5e-32 142.1 320 36.9
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.2e-31 140.6 311 34.4
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 3.2e-30 136.7 279 33.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 7.1e-30 135.6 292 37.3
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 9.2e-30 135.2 360 35.0
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 4.6e-29 132.9 298 33.9
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.9e-28 129.8 373 33.5
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.9e-27 127.5 327 30.3
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.3e-27 126.7 331 29.0
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.8e-25 120.9 360 30.0
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 3.1e-25 120.2 306 34.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 8.9e-25 118.6 326 32.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.2e-23 114.0 323 31.0
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 3.8e-23 113.2 336 33.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 4.9e-23 112.8 367 34.3
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.9e-22 110.9 293 31.1
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.4e-22 110.5 277 31.0
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 4.1e-22 109.8 169 42.6
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.2e-21 108.2 359 33.1
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 2.1e-21 107.5 56 91.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.1e-21 107.5 317 29.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.0e-20 105.1 357 29.7
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.7e-20 104.4 361 32.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.7e-20 104.4 323 29.4
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 6.6e-20 102.4 350 32.0
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 9.6e-19 98.6 373 29.2
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 9.6e-19 98.6 310 27.1
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.6e-18 96.7 168 38.1
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 8.1e-18 95.5 380 28.4
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.1e-17 95.1 249 33.7
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 8.9e-17 92.0 166 39.8
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 8.4e-15 85.5 257 33.1
BolC9t58059H Brassica oleracea HOM05D000001 ORTHO05D009726 2.7e-13 80.5 43 97.7
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 4.6e-13 79.7 397 25.2
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.0e-12 77.0 150 36.0
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 3.0e-12 77.0 331 29.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 5.1e-12 76.3 362 30.1
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 6.6e-12 75.9 194 27.3
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.5e-11 73.9 377 25.7
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 5.6e-11 72.8 365 29.6
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 7.3e-11 72.4 325 22.8
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.8e-09 67.8 143 32.2
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.6e-08 63.9 183 32.2
A07p16080 Brassica napus HOM05D005472 ORTHO05D005897 9.9e-08 62.0 54 68.5
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.3e-07 61.6 341 24.6
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.2e-06 57.0 104 35.6


User provided reference genes

Program Settings