Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 1.9e-195 685.6 352 100.0
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 2.5e-166 589.0 370 83.0
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 2.7e-165 585.5 371 83.0
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 2.7e-165 585.5 371 83.0
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 6.8e-164 580.9 372 82.8
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 4.1e-161 571.6 352 83.8
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 5.4e-161 571.2 370 80.5
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 4.5e-160 568.2 370 81.6
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 3.8e-159 565.1 370 80.8
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 9.4e-158 560.5 370 79.7
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 4.7e-157 558.1 352 81.8
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 1.4e-153 546.6 347 82.4
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 5.2e-140 501.5 352 74.1
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 1.1e-118 430.6 357 67.5
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 9.6e-118 427.6 240 88.3
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 4.0e-100 369.0 354 59.3
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 8.4e-98 361.3 354 56.8
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 7.1e-97 358.2 353 57.8
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 7.1e-97 358.2 351 57.3
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 6.2e-93 345.1 331 55.3
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 8.1e-93 344.7 348 54.9
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 1.8e-92 343.6 312 60.3
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.8e-92 343.6 331 55.3
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 2.6e-91 339.7 349 56.2
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 4.5e-91 339.0 341 54.0
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 2.9e-90 336.3 256 66.4
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 3.2e-89 332.8 252 67.1
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 5.5e-89 332.0 256 64.8
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.2e-88 330.9 342 56.1
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 3.5e-88 329.3 341 54.0
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 6.0e-88 328.6 312 57.4
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 7.9e-88 328.2 322 56.5
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 3.0e-87 326.2 310 58.1
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.9e-87 325.9 299 58.2
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 5.1e-87 325.5 263 63.5
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 6.7e-87 325.1 354 52.8
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.1e-86 324.3 335 53.4
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 4.3e-86 322.4 304 56.6
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 5.7e-86 322.0 300 58.0
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 5.7e-86 322.0 355 53.0
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 9.6e-86 321.2 278 61.9
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 9.6e-86 321.2 313 56.5
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.6e-85 320.5 327 55.7
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.7e-85 319.3 355 53.0
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.8e-84 317.0 268 60.8
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 5.3e-84 315.5 267 61.8
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 9.0e-84 314.7 294 58.2
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 2.0e-83 313.5 250 64.4
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 2.0e-83 313.5 317 55.2
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 3.4e-83 312.8 307 57.7
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 3.4e-83 312.8 261 60.9
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 4.5e-83 312.4 331 54.7
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 5.9e-83 312.0 345 51.9
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 7.6e-83 311.6 252 63.5
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 1.3e-82 310.8 283 58.0
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.3e-82 310.8 277 58.5
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 3.8e-82 309.3 288 58.3
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 3.8e-82 309.3 297 55.6
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 3.8e-82 309.3 261 60.9
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 3.8e-82 309.3 254 61.4
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.8e-82 309.3 261 61.7
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 6.5e-82 308.5 269 61.0
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 1.1e-81 307.8 254 61.4
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.4e-81 307.4 232 65.5
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 2.5e-81 306.6 287 56.8
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 7.2e-81 305.1 254 61.0
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 2.1e-80 303.5 237 62.4
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 2.1e-80 303.5 316 51.6
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.7e-80 303.1 264 59.5
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 3.5e-80 302.8 339 51.6
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 4.6e-80 302.4 276 58.7
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 4.6e-80 302.4 278 57.9
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 1.3e-79 300.8 276 59.8
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 2.3e-79 300.1 276 58.3
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 3.0e-79 299.7 259 64.1
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 6.7e-79 298.5 360 50.6
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 1.1e-78 297.7 254 62.2
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 1.5e-78 297.4 274 59.1
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 2.5e-78 296.6 219 70.3
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 3.3e-78 296.2 296 56.4
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 5.7e-78 295.4 278 57.6
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 1.6e-77 293.9 347 49.6
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 2.2e-77 293.5 331 52.3
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 4.8e-77 292.4 358 48.3
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 8.2e-77 291.6 281 56.2
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 1.4e-76 290.8 261 59.0
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 3.1e-76 289.7 259 58.3
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 4.1e-76 289.3 275 55.6
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 5.9e-75 285.4 226 64.6
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 7.7e-75 285.0 289 56.4
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 1.3e-74 284.3 350 47.7
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 2.9e-74 283.1 260 57.7
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 3.8e-74 282.7 199 71.4
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.9e-73 280.4 348 48.9
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 2.5e-73 280.0 261 59.0
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 4.2e-73 279.3 341 48.4
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 1.2e-72 277.7 252 57.1
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 1.2e-72 277.7 296 51.7
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.7e-72 276.6 341 48.1
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 6.1e-72 275.4 242 59.1
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.4e-71 274.2 238 60.9
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 6.7e-71 271.9 181 74.0
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.5e-70 270.0 363 46.6
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 3.1e-68 263.1 189 70.4
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 9.1e-68 261.5 200 69.5
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 1.4e-60 237.7 212 57.1
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 5.3e-60 235.7 253 49.0
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 7.0e-60 235.3 263 52.1
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 2.6e-59 233.4 243 51.4
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 3.8e-58 229.6 269 46.8
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 2.1e-56 223.8 154 71.4
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 1.9e-49 200.7 228 48.2
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 2.7e-48 196.8 222 50.5
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 2.3e-47 193.7 121 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.5e-46 191.0 171 53.8
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.0e-46 190.7 235 43.8
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.3e-45 188.0 235 43.0
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 3.7e-45 186.4 103 81.6
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 8.9e-31 138.7 79 77.2
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 1.7e-29 134.4 69 85.5
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 5.2e-23 112.8 279 34.1
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 1.4e-20 104.8 277 33.9
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 1.0e-18 98.6 305 31.1
BcaB07g32077 Brassica carinata HOM05D005712 ORTHO05D007865 3.0e-18 97.1 69 72.5
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 7.3e-17 92.4 61 70.5
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 3.6e-16 90.1 175 38.3
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 7.3e-09 65.9 41 78.0


User provided reference genes

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