Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.0e-106 389.0 184 100.0
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.7e-97 359.4 182 92.9
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.7e-97 358.2 181 94.5
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 8.3e-97 357.1 181 94.5
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 4.1e-96 354.8 182 93.4
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.0e-95 352.4 182 92.9
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 4.5e-95 351.3 185 93.0
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 5.9e-95 350.9 184 92.4
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 6.6e-94 347.4 184 91.8
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 9.5e-93 343.6 184 90.2
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.6e-92 341.7 186 89.2
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 6.8e-91 337.4 184 89.1
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.0e-90 335.9 182 90.1
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 4.4e-90 334.7 182 87.4
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 4.9e-89 331.3 184 87.5
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.1e-88 330.1 184 87.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.7e-81 305.1 187 78.6
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-80 303.5 160 91.9
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-79 300.1 184 75.0
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 6.0e-79 297.7 187 76.5
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 7.8e-79 297.4 189 74.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.3e-78 295.8 185 77.8
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.0e-78 295.4 188 76.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 3.9e-78 295.0 187 77.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.9e-78 295.0 187 77.0
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 5.6e-77 291.2 184 75.0
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.6e-77 291.2 185 76.8
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-76 290.0 184 75.0
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 8.1e-76 287.3 172 77.9
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.1e-75 287.0 170 78.8
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.3e-75 285.8 184 74.5
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 4.0e-75 285.0 173 76.9
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 5.2e-75 284.6 193 71.0
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 8.9e-75 283.9 148 86.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.0e-74 282.7 221 66.5
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.0e-74 282.7 191 72.8
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 2.6e-74 282.3 178 73.6
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.4e-74 282.0 184 74.5
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 3.4e-74 282.0 182 72.5
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 4.4e-74 281.6 182 73.1
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 4.4e-74 281.6 185 73.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 4.4e-74 281.6 168 80.4
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 7.6e-74 280.8 182 73.6
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 7.6e-74 280.8 184 73.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 7.6e-74 280.8 182 73.6
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.3e-73 280.0 184 73.9
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.2e-73 279.3 184 73.4
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.9e-73 278.9 186 72.0
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 6.4e-73 277.7 143 87.4
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.1e-72 276.9 165 78.8
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.1e-72 276.9 184 72.3
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.4e-72 276.6 143 86.7
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.4e-72 275.8 156 80.8
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 3.2e-72 275.4 145 84.8
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.2e-72 275.4 188 68.1
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 4.1e-72 275.0 185 72.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 7.1e-72 274.2 186 71.5
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 9.2e-72 273.9 173 73.4
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.2e-71 273.5 184 67.4
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.2e-71 273.5 184 67.4
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.6e-71 273.1 143 85.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.1e-71 272.7 158 79.7
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.7e-71 272.3 187 72.2
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.6e-71 271.6 143 84.6
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 6.0e-71 271.2 188 69.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.8e-71 270.8 183 72.7
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 7.8e-71 270.8 157 79.0
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.7e-70 269.6 171 74.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.7e-70 269.6 151 82.8
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 3.9e-70 268.5 151 82.1
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 6.6e-70 267.7 148 82.4
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.1e-69 266.9 157 78.3
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.5e-69 266.5 142 83.8
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 2.5e-69 265.8 153 79.7
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 2.5e-69 265.8 153 79.7
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 3.3e-69 265.4 179 68.7
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 3.3e-69 265.4 143 79.7
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 7.3e-69 264.2 185 70.3
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 7.3e-69 264.2 151 80.8
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.6e-68 263.1 212 62.3
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.1e-67 258.8 168 73.2
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.1e-67 258.8 141 79.4
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.1e-67 258.8 142 80.3
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.8e-67 257.7 142 79.6
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.6e-66 255.8 154 74.7
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.9e-65 252.3 186 71.0
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.9e-64 249.6 152 75.7
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.6e-63 246.5 143 76.2
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.7e-62 243.0 146 73.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-62 243.0 140 74.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.9e-62 241.9 167 72.5
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.1e-61 240.4 156 72.4
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.9e-61 239.6 140 74.3
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.3e-61 238.8 162 72.8
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 7.3e-61 237.7 126 84.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 6.2e-60 234.6 165 70.3
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 4.0e-59 231.9 163 71.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 9.9e-58 227.3 119 84.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.3e-57 226.9 122 83.6
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.7e-57 226.5 127 78.7
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.8e-57 225.3 178 63.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.8e-57 225.3 149 71.8
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.3e-56 220.7 140 68.6
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 6.0e-55 218.0 151 70.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 3.0e-54 215.7 168 64.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.6e-52 208.8 128 75.0
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.1e-51 207.2 120 78.3
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.1e-48 197.2 148 66.2
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.1e-48 197.2 119 77.3
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 4.3e-45 185.3 184 50.5
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.6e-45 184.9 99 83.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.0e-41 174.1 151 52.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.1e-39 166.4 105 76.2
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.0e-38 164.1 150 54.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.3e-38 163.7 146 52.7
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.3e-38 162.9 149 60.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.9e-37 159.8 140 54.3
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.5e-37 159.5 116 65.5
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.3e-37 159.1 175 47.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 5.7e-37 158.3 87 81.6
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.4e-32 143.7 72 94.4
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.9e-32 143.3 186 51.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.9e-32 143.3 150 46.7
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.9e-32 143.3 173 43.4
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.9e-32 143.3 155 51.6
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 6.1e-31 138.3 85 72.9
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-30 137.1 70 92.9
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 2.4e-27 126.3 59 93.2
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 3.4e-26 122.5 149 43.6
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-24 116.7 53 98.1
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.7e-22 108.2 118 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 3.2e-16 89.4 76 56.6
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 6.1e-15 85.1 120 45.0
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.6e-13 79.7 145 32.4
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.2e-12 76.6 81 54.3
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.0e-10 70.1 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 7.7e-10 68.2 31 87.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.1e-07 60.1 154 25.3
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 6.1e-07 58.5 57 49.1


User provided reference genes

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