Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 5.0e-204 714.1 345 100.0
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.6e-173 611.3 349 86.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.6e-173 611.3 349 86.2
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.0e-172 610.1 349 86.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 4.3e-171 604.7 349 86.0
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 2.1e-170 602.4 349 85.7
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-169 599.7 325 90.2
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.9e-169 597.0 349 84.8
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 2.9e-167 592.0 338 86.1
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 4.6e-165 584.7 349 82.5
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 2.0e-160 569.3 351 79.2
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 2.0e-160 569.3 347 82.1
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 5.4e-158 561.2 328 85.7
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 7.1e-158 560.8 349 79.1
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 1.5e-155 553.1 303 87.5
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 3.4e-152 542.0 348 76.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.9e-147 526.2 343 74.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.7e-138 495.4 328 78.4
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.7e-138 495.4 346 71.1
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 5.8e-136 488.0 348 69.0
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.9e-135 485.7 346 67.3
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 6.5e-135 484.6 348 68.1
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 6.5e-135 484.6 338 70.4
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.1e-134 483.8 347 69.2
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 2.5e-134 482.6 347 66.3
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 3.2e-134 482.3 349 68.5
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 4.2e-134 481.9 348 67.5
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 9.3e-134 480.7 346 68.5
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 4.6e-133 478.4 344 67.4
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 7.9e-133 477.6 336 69.6
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.3e-132 476.1 343 68.8
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.3e-132 476.1 343 68.2
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.0e-132 475.7 346 67.3
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.9e-132 475.3 346 67.6
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 3.9e-132 475.3 349 67.6
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.7e-132 474.2 346 67.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.9e-131 473.0 345 67.5
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 7.4e-131 471.1 346 65.6
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 9.6e-131 470.7 335 67.5
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.3e-130 470.3 344 67.7
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 3.7e-130 468.8 348 67.5
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 4.8e-130 468.4 347 67.7
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 6.3e-130 468.0 348 65.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.1e-129 467.2 354 66.4
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.1e-129 467.2 342 66.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.4e-129 466.1 347 66.6
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.1e-129 465.7 347 66.6
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.1e-129 465.7 347 65.4
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 3.1e-129 465.7 342 66.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 3.1e-129 465.7 342 66.4
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.3e-129 464.9 369 63.4
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.9e-129 464.5 351 67.2
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 9.0e-129 464.2 349 65.0
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 9.0e-129 464.2 360 63.3
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.5e-128 463.4 339 66.4
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.0e-128 463.0 341 66.9
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.6e-128 462.6 338 68.6
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.4e-128 462.2 345 67.0
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 3.4e-128 462.2 341 67.4
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.4e-128 462.2 345 64.6
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 5.9e-128 461.5 344 65.4
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 5.9e-128 461.5 338 68.0
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.0e-127 460.7 344 65.4
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.0e-127 460.7 348 66.1
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.7e-127 459.9 336 65.8
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.9e-127 459.1 345 66.1
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.9e-127 459.1 347 65.7
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 3.8e-127 458.8 378 62.4
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 6.5e-127 458.0 338 66.3
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.5e-127 458.0 347 66.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.1e-126 457.2 350 66.3
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.1e-126 457.2 348 65.5
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 1.4e-126 456.8 341 66.3
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.5e-126 456.1 348 65.2
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 9.3e-126 454.1 351 62.4
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.2e-125 453.8 344 65.4
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.6e-125 453.4 343 66.5
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 7.9e-125 451.1 352 62.8
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.0e-124 450.7 337 65.9
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.0e-124 449.1 347 64.3
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 3.9e-124 448.7 348 65.2
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 8.7e-124 447.6 347 64.0
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.9e-123 446.4 345 64.3
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.9e-123 446.4 329 65.7
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.5e-123 446.0 339 64.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.3e-122 443.7 354 63.6
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.8e-122 442.6 332 66.3
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 8.2e-122 441.0 350 62.3
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 4.1e-121 438.7 403 56.3
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 4.1e-121 438.7 347 62.5
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 6.9e-121 438.0 340 65.0
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 6.9e-121 438.0 345 63.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.5e-120 436.8 349 63.0
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.6e-120 436.0 292 69.5
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 5.9e-120 434.9 336 62.8
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 6.5e-119 431.4 340 62.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.4e-118 430.3 335 65.1
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.5e-118 429.5 324 64.8
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.2e-118 429.1 320 66.2
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.1e-117 426.4 301 70.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.0e-116 424.1 349 59.9
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.0e-116 424.1 337 60.5
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 7.7e-112 407.9 232 79.7
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 9.4e-110 401.0 233 83.7
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.6e-109 400.2 242 74.4
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 1.0e-108 397.5 339 59.9
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.4e-108 397.1 246 72.4
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.8e-108 396.7 247 73.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 7.2e-102 374.8 304 60.9
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 8.8e-100 367.9 324 59.0
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 8.5e-95 351.3 326 54.3
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 7.7e-88 328.2 243 64.6
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 3.8e-87 325.9 255 67.1
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.4e-81 306.6 323 49.5
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.5e-78 296.6 240 62.9
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.3e-74 284.3 242 62.8
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 4.9e-74 282.3 235 61.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-72 276.9 243 60.1
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-72 276.9 243 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.7e-66 257.3 173 69.9
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 2.8e-61 240.0 246 48.0
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.4e-57 226.9 162 67.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.1e-52 211.5 192 56.2
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.5e-51 207.6 193 54.9
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 3.4e-51 206.5 174 56.9
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 2.9e-50 203.4 183 53.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.0e-47 194.9 160 61.9
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.3e-26 124.8 73 76.7
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.1e-25 121.7 79 70.9
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.0e-19 100.9 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 2.7e-08 63.9 53 60.4


User provided reference genes

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