Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 8.7e-240 833.2 404 100.0
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 3.5e-188 661.8 402 84.8
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-186 656.4 400 83.8
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 8.8e-184 647.1 402 83.1
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-183 646.4 392 83.7
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 4.4e-183 644.8 400 83.0
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 1.7e-182 642.9 392 83.4
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 2.3e-139 499.6 319 82.4
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 1.9e-114 416.8 400 60.0
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 9.6e-114 414.5 257 83.7
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 8.5e-94 348.2 405 50.1
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.9e-90 337.0 411 50.4
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-89 334.3 398 50.5
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.4e-87 326.2 406 47.8
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-85 321.2 374 50.5
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 1.1e-85 321.2 374 50.5
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-84 317.8 405 48.1
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.7e-81 306.2 342 51.8
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 6.3e-81 305.4 379 48.0
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.1e-80 302.8 306 58.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 6.9e-80 302.0 391 48.1
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 4.5e-79 299.3 418 44.5
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 2.4e-72 276.9 287 56.4
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.0e-67 259.6 345 47.2
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 1.0e-62 245.0 403 39.2
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.3e-62 244.6 183 69.4
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.6e-60 236.5 412 40.8
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 9.8e-58 228.4 378 41.3
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.8e-57 226.9 375 41.6
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 4.1e-56 223.0 262 48.1
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 7.0e-56 222.2 367 39.5
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.7e-55 220.3 380 40.3
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-54 218.0 222 54.5
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.3e-53 213.4 407 37.8
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 6.1e-52 209.1 375 37.3
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 6.1e-52 209.1 375 37.3
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.4e-51 208.0 397 36.3
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 8.9e-51 205.3 351 41.3
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 8.9e-51 205.3 432 33.6
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 3.4e-50 203.4 375 37.1
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 3.7e-49 199.9 380 35.8
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 1.4e-48 198.0 375 37.1
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.4e-48 198.0 378 38.6
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.1e-48 196.8 366 36.6
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 4.1e-48 196.4 375 36.8
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.4e-48 196.1 376 37.2
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 9.2e-48 195.3 369 35.8
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.1e-45 188.3 407 35.6
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 1.6e-44 184.5 406 37.4
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.6e-44 184.5 345 38.8
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 2.1e-44 184.1 375 34.9
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-43 180.6 391 34.8
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-43 180.6 369 37.4
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 2.3e-43 180.6 369 37.4
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.0e-43 180.3 371 34.8
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 4.0e-43 179.9 375 34.4
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 4.0e-43 179.9 305 41.6
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 8.9e-43 178.7 371 37.2
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 2.0e-42 177.6 372 36.8
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 7.5e-42 175.6 372 37.6
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 2.9e-41 173.7 118 78.0
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 1.6e-39 167.9 386 34.2
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.1e-35 153.7 180 52.2
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.7e-33 146.7 313 34.5
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.4e-33 146.0 323 34.7
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 8.3e-33 145.6 352 33.0
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 1.4e-32 144.8 367 33.0
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.3e-30 138.3 367 30.5
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 1.7e-30 137.9 244 35.7
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.7e-30 137.9 326 32.2
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 4.3e-29 133.3 355 30.7
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.6e-28 131.3 373 30.6
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 3.6e-28 130.2 262 38.5
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.6e-26 124.0 353 31.7
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.4e-24 118.2 269 37.2
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.1e-24 116.7 329 31.3
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 3.5e-23 113.6 180 42.2
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-22 111.7 64 90.6
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.5e-21 108.2 82 68.3
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 2.5e-21 107.5 212 37.3
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 2.5e-21 107.5 212 37.3
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 9.5e-21 105.5 156 40.4
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.6e-20 104.8 140 47.1
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.9e-19 99.0 336 27.4
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 7.1e-16 89.4 361 29.1
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 5.1e-14 83.2 104 41.3
BcaB03g12779 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-11 75.5 63 68.3
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 1.8e-11 74.7 102 40.2
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.5e-10 71.6 160 33.8
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 1.7e-09 68.2 348 23.3
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 4.9e-09 66.6 120 38.3
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 4.9e-09 66.6 360 26.1
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.4e-08 64.3 268 25.0
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 4.6e-07 60.1 45 64.4
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 4.6e-07 60.1 85 41.2
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 6.0e-07 59.7 42 66.7
BcaC01g05840 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-06 57.8 70 44.3
PSO339G5184 Papaver somniferum HOM05D000007 ORTHO05D000676 3.0e-06 57.4 267 23.6
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 3.9e-06 57.0 147 25.9


User provided reference genes

Program Settings