Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.6e-203 711.8 356 100.0
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 2.9e-170 602.1 364 85.2
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 4.9e-170 601.3 363 84.6
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-169 600.1 364 85.2
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 3.2e-169 598.6 364 84.9
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.0e-168 594.3 360 85.3
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.1e-165 585.9 363 81.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 3.2e-161 572.0 364 80.5
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 8.1e-149 530.8 360 76.4
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 3.1e-148 528.9 360 76.1
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 2.0e-139 499.6 333 77.8
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 9.9e-139 497.3 362 76.0
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.4e-137 493.4 361 75.9
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.5e-134 483.4 363 75.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 3.4e-131 472.2 361 73.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 2.4e-124 449.5 368 70.1
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 6.1e-112 408.3 358 61.5
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 3.5e-83 312.8 364 55.2
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 3.4e-62 243.0 156 80.1
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 2.0e-59 233.8 164 73.2
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.5e-57 224.9 139 82.7
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 4.0e-55 219.5 415 39.3
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 5.4e-52 209.1 409 38.4
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.3e-49 199.5 407 35.9
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.2e-48 198.0 433 36.7
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 8.1e-48 195.3 402 36.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.1e-47 194.9 417 36.9
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.1e-47 194.9 429 37.3
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.4e-47 194.5 425 36.5
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 1.4e-47 194.5 351 39.6
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 5.2e-47 192.6 416 37.7
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 5.2e-47 192.6 411 38.0
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.5e-46 191.0 420 38.3
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 7.6e-46 188.7 424 34.7
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.7e-45 187.6 425 37.2
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.9e-45 186.8 416 36.1
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.9e-45 186.8 361 39.6
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 3.7e-45 186.4 414 35.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 4.9e-45 186.0 414 34.1
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 4.9e-45 186.0 425 37.4
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.9e-45 186.0 424 35.6
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.4e-44 184.5 427 34.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.4e-44 184.5 348 39.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.4e-44 183.7 425 36.9
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.1e-44 183.0 423 36.4
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 7.1e-44 182.2 419 36.8
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 7.1e-44 182.2 404 37.9
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.2e-43 181.4 312 42.0
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.1e-43 180.6 370 38.1
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.1e-43 180.6 312 42.0
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.5e-43 179.9 441 36.7
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 3.5e-43 179.9 428 36.2
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.7e-42 177.6 420 36.0
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 2.3e-42 177.2 417 37.2
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.5e-41 173.7 391 36.3
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.3e-41 173.3 348 39.4
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 4.3e-41 172.9 416 34.9
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 4.3e-41 172.9 414 35.7
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 5.6e-41 172.6 107 81.3
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 5.6e-41 172.6 107 81.3
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 4.7e-40 169.5 405 34.1
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 6.2e-40 169.1 317 37.5
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.4e-39 167.2 464 34.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 5.2e-39 166.0 329 37.7
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.5e-38 164.5 316 38.9
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.0e-38 164.1 312 39.1
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 2.6e-38 163.7 411 34.5
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.6e-38 163.7 409 33.7
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 3.4e-38 163.3 419 35.3
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 9.9e-38 161.8 312 37.8
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.2e-37 160.6 327 36.4
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 2.9e-37 160.2 330 35.5
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.9e-37 160.2 312 37.5
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.9e-37 160.2 352 34.1
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 4.9e-37 159.5 417 34.5
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.4e-37 159.1 422 31.8
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.1e-36 158.3 361 34.6
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 2.7e-35 153.7 313 38.3
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 6.0e-35 152.5 342 37.7
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.0e-34 151.8 338 38.8
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 3.9e-34 149.8 341 34.0
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 8.7e-34 148.7 369 36.9
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.5e-33 147.9 338 37.6
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 2.5e-33 147.1 315 36.2
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.3e-33 146.4 342 36.5
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 4.3e-33 146.4 408 31.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.3e-33 146.4 431 32.9
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 9.6e-33 145.2 382 34.3
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.3e-32 144.8 272 39.7
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.8e-32 143.7 413 33.4
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.8e-32 143.7 360 33.9
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 3.6e-32 143.3 312 36.5
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 3.6e-32 143.3 344 35.8
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 4.8e-32 142.9 368 32.6
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.8e-32 142.9 336 35.7
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.1e-31 141.7 346 35.5
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.4e-31 141.4 260 39.2
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.4e-31 141.4 346 35.0
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.4e-31 141.4 272 37.5
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.8e-31 141.0 363 34.4
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 6.9e-31 139.0 308 37.3
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 6.9e-31 139.0 357 34.2
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 9.0e-31 138.7 450 32.2
CARHR240540 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.2e-30 138.3 78 85.9
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 7.6e-30 135.6 316 35.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 9.9e-30 135.2 233 41.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 4.9e-29 132.9 339 33.9
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 8.4e-29 132.1 437 30.7
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 1.1e-28 131.7 368 34.5
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.1e-28 131.7 403 32.5
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.4e-28 131.3 456 30.5
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 1.9e-28 131.0 76 82.9
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 4.2e-28 129.8 279 38.4
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 5.4e-28 129.4 370 31.9
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.6e-27 126.3 218 41.3
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 6.0e-27 125.9 249 36.1
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.8e-26 124.4 326 34.7
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.5e-25 120.6 237 37.1
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.3e-25 119.8 192 43.2
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.3e-25 119.8 331 34.1
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 4.3e-25 119.8 333 31.8
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 9.6e-25 118.6 312 32.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.5e-22 111.3 329 31.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.6e-22 110.5 386 29.8
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 4.2e-20 103.2 357 29.4
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 9.3e-20 102.1 301 34.6
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.3e-18 98.2 232 34.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 8.7e-18 95.5 213 33.3
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 9.6e-17 92.0 60 75.0
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 8.1e-16 89.0 136 41.9
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.1e-15 88.6 121 43.8
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.0e-15 86.7 131 42.0
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 9.0e-15 85.5 129 41.1
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.0e-14 84.3 131 40.5
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 2.2e-13 80.9 149 38.9
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 4.9e-13 79.7 120 41.7
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 9.3e-12 75.5 68 55.9
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.3e-10 70.9 241 30.3
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 5.1e-10 69.7 113 42.5
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 9.6e-09 65.5 166 33.7
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 9.6e-09 65.5 71 47.9


User provided reference genes

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