Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 3.3e-105 385.2 216 100.0
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 9.7e-105 383.6 216 99.5
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.7e-101 372.9 216 97.2
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 8.5e-101 370.5 216 97.2
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 8.5e-101 370.5 216 97.2
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 8.5e-101 370.5 216 97.2
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 8.5e-101 370.5 216 93.5
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-100 370.2 216 96.8
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.5e-100 369.0 216 95.4
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.5e-100 369.0 216 95.4
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 4.2e-100 368.2 216 95.4
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 4.2e-100 368.2 216 95.4
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-98 361.7 217 94.9
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.5e-97 359.8 216 94.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.0e-97 359.4 217 84.3
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 2.7e-94 349.0 218 91.3
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 5.2e-90 334.7 216 82.4
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 4.4e-89 331.6 216 83.8
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 1.8e-87 326.2 216 76.9
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 5.0e-85 318.2 216 73.6
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 3.5e-78 295.4 169 82.8
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 7.7e-78 294.3 169 82.8
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.7e-77 293.1 221 68.3
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.5e-76 289.3 169 79.9
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 9.5e-76 287.3 169 79.9
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 4.7e-75 285.0 169 79.3
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 6.1e-75 284.6 169 78.1
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 8.0e-75 284.3 170 80.6
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 8.0e-75 284.3 170 80.6
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 1.0e-74 283.9 169 78.7
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.0e-74 283.9 169 80.5
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 2.3e-74 282.7 170 79.4
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.0e-74 282.3 169 80.5
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.0e-74 282.3 169 78.1
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 6.8e-74 281.2 220 65.0
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 8.9e-74 280.8 169 77.5
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.9e-74 280.8 169 77.5
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-73 280.0 169 78.1
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 1.5e-73 280.0 169 79.3
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.5e-73 280.0 218 65.1
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 2.0e-73 279.6 170 78.8
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.4e-73 278.9 169 77.5
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 5.7e-73 278.1 169 76.9
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 7.5e-73 277.7 217 65.0
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 7.5e-73 277.7 169 77.5
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 7.5e-73 277.7 170 78.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 7.5e-73 277.7 170 77.6
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 7.5e-73 277.7 169 79.9
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.7e-72 276.6 170 76.5
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.7e-72 276.6 170 77.6
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.7e-72 276.6 169 75.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.7e-72 276.6 169 76.3
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 4.9e-72 275.0 206 63.1
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 4.1e-71 271.9 169 75.1
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 4.1e-71 271.9 170 77.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 7.0e-71 271.2 169 74.6
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 7.0e-71 271.2 169 77.5
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 9.2e-71 270.8 169 74.0
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 9.2e-71 270.8 169 75.1
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.2e-70 270.4 206 62.1
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.2e-70 270.4 169 74.0
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.7e-70 269.2 169 75.7
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.7e-70 269.2 170 75.9
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.0e-69 267.3 169 72.8
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.7e-69 266.5 216 63.4
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.7e-69 266.5 169 74.6
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 2.3e-69 266.2 169 74.0
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.0e-69 265.8 169 73.4
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 3.0e-69 265.8 169 74.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 5.0e-69 265.0 170 74.1
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 8.6e-69 264.2 170 74.1
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.1e-68 263.8 169 71.6
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 1.5e-68 263.5 169 73.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.5e-68 263.5 169 74.0
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 3.3e-68 262.3 169 73.4
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 4.3e-68 261.9 169 72.2
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 9.5e-68 260.8 166 72.3
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 1.2e-67 260.4 169 72.8
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.6e-67 260.0 170 72.4
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 4.7e-67 258.5 170 71.2
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 6.2e-67 258.1 169 71.0
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 6.2e-67 258.1 170 73.5
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.4e-66 256.9 169 71.0
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 1.4e-66 256.9 170 72.4
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 4.0e-66 255.4 169 74.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 8.9e-66 254.2 170 71.8
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.2e-65 253.8 170 71.8
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.2e-65 253.8 170 71.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.2e-65 253.8 170 72.4
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.6e-65 252.7 161 73.3
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.6e-65 252.7 170 71.2
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 2.6e-65 252.7 170 71.2
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.4e-65 252.3 170 70.0
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 4.4e-65 251.9 217 59.4
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 5.8e-65 251.5 170 70.0
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.3e-64 250.4 170 70.0
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.7e-64 250.0 170 70.6
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.7e-64 250.0 170 70.6
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 4.9e-64 248.4 170 71.2
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 8.3e-64 247.7 169 69.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 8.3e-64 247.7 169 69.2
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.4e-63 246.9 170 70.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 5.4e-63 245.0 149 77.2
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.0e-61 240.7 189 61.4
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 8.6e-61 237.7 170 65.9
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-59 233.8 188 61.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.6e-59 233.4 171 66.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.1e-59 233.0 188 61.2
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.8e-59 232.6 222 55.9
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 1.4e-58 230.3 171 65.5
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 5.2e-58 228.4 236 51.7
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 5.8e-57 224.9 286 46.2
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 5.4e-55 218.4 256 46.5
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.7e-54 216.1 171 62.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 2.7e-54 216.1 171 62.0
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 4.6e-54 215.3 169 59.2
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 7.8e-54 214.5 171 61.4
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.1e-50 204.1 134 71.6
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.4e-50 203.8 134 71.6
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 1.5e-49 200.3 169 58.0
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 8.4e-48 194.5 140 65.0
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 3.5e-46 189.1 208 54.8
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 2.3e-45 186.4 112 75.0
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.1e-44 184.1 104 80.8
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 2.8e-43 179.5 91 95.6
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 2.8e-43 179.5 151 59.6
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.8e-42 176.8 146 61.6
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 5.2e-42 175.3 104 75.0
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 2.9e-40 169.5 93 82.8
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 3.8e-40 169.1 105 72.4
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.2e-38 164.1 103 70.9
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.1e-38 163.3 107 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 3.9e-37 159.1 134 58.2
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 6.6e-37 158.3 109 67.0
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 7.3e-36 154.8 106 64.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.1e-34 149.4 85 81.2
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 5.3e-34 148.7 146 58.2
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 5.3e-34 148.7 146 58.2
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 7.6e-33 144.8 113 57.5
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-29 133.3 90 74.4
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 7.9e-22 108.2 72 69.4
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.0e-18 95.9 66 71.2
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.9e-16 89.0 76 55.3
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.1e-12 77.8 78 47.4
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 5.7e-12 75.5 59 61.0
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 6.3e-11 72.0 54 57.4
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.8e-10 70.5 48 70.8
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 2.4e-10 70.1 51 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 3.1e-10 69.7 46 60.9
BolC3t21104H Brassica oleracea HOM05D046859 ORTHO05D040831 3.4e-09 66.2 82 72.0


User provided reference genes

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