Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 6.5e-162 573.9 279 100.0
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 6.0e-139 497.7 299 83.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-138 496.5 296 84.1
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 5.6e-129 464.5 299 78.9
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 8.9e-127 457.2 298 77.5
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 6.6e-122 441.0 302 75.5
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.1e-119 432.2 298 73.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 8.9e-119 430.6 302 73.8
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.0e-118 429.5 297 73.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.6e-118 429.1 302 75.2
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 7.6e-118 427.6 302 73.5
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.2e-116 422.2 297 76.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.2e-116 421.8 296 76.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 5.4e-116 421.4 303 71.9
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 3.4e-110 402.1 296 68.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 7.6e-110 401.0 298 69.1
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.9e-109 399.1 298 68.1
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.2e-108 395.6 297 74.1
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.1e-95 352.4 315 59.4
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 8.4e-93 344.4 288 64.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.1e-81 307.4 313 53.7
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.3e-81 305.4 312 53.2
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.1e-79 300.8 319 50.5
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-79 300.4 319 50.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.4e-79 299.7 319 51.7
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.3e-79 298.5 310 50.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.6e-78 296.2 322 49.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 4.5e-78 295.4 322 50.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 4.5e-78 295.4 322 50.3
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.0e-77 294.3 315 51.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.0e-77 294.3 312 52.2
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 4.2e-76 288.9 321 49.8
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 5.5e-76 288.5 318 50.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 7.2e-76 288.1 311 50.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 3.0e-74 282.7 289 50.9
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.0e-74 282.7 303 48.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.6e-73 279.6 314 50.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.3e-73 279.3 319 49.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.7e-73 278.5 329 46.5
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.4e-73 278.1 323 47.4
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 9.7e-73 277.7 320 49.1
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.3e-72 277.3 302 49.7
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.8e-72 275.4 322 47.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 8.2e-72 274.6 310 51.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-71 273.5 320 46.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.4e-71 273.1 316 48.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.1e-71 271.2 312 49.7
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-70 270.8 317 48.6
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-70 270.8 317 48.6
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.2e-70 270.8 316 46.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-70 270.4 302 47.4
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.6e-70 269.6 310 50.0
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.6e-70 269.6 329 45.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.7e-70 268.1 301 49.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.0e-69 267.7 307 48.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.3e-69 267.3 317 47.9
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.3e-69 267.3 300 48.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.7e-69 266.9 317 47.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.7e-69 266.9 317 48.3
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.9e-69 266.2 306 48.0
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.8e-69 265.8 314 46.8
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.8e-69 265.8 323 45.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.0e-69 265.4 283 49.8
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 6.5e-69 265.0 303 45.9
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 6.5e-69 265.0 314 46.2
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.4e-68 263.8 315 48.6
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.2e-68 262.3 330 46.4
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 4.2e-68 262.3 298 45.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 5.5e-68 261.9 315 47.3
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 7.2e-68 261.5 318 46.5
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 9.4e-68 261.2 307 45.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-67 260.8 319 45.8
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.2e-67 260.8 311 47.6
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.6e-67 260.4 317 47.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.6e-67 260.4 326 44.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.1e-67 260.0 317 46.1
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.1e-67 260.0 315 46.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.3e-66 256.5 301 47.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 3.0e-66 256.1 335 42.7
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.0e-66 256.1 299 46.2
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 5.2e-66 255.4 316 46.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.7e-66 255.0 318 45.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.7e-66 255.0 322 46.0
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 3.3e-65 252.7 316 45.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.4e-65 252.3 293 45.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 5.7e-65 251.9 300 47.3
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 7.4e-65 251.5 312 48.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 7.4e-65 251.5 321 44.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.3e-64 250.8 293 45.4
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.3e-64 250.8 320 46.2
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.3e-64 250.8 303 46.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.2e-64 250.0 305 44.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.7e-64 249.2 320 44.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.3e-64 248.4 320 43.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 6.3e-64 248.4 321 45.8
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 6.3e-64 248.4 305 45.6
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.1e-63 246.1 309 44.0
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 7.0e-63 245.0 311 46.3
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.6e-62 243.0 323 42.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.9e-62 241.9 304 45.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 5.9e-62 241.9 304 45.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.9e-62 241.9 301 44.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 8.5e-61 238.0 318 45.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.1e-60 237.7 313 44.4
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.5e-60 237.3 226 52.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.5e-60 236.5 322 44.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-60 236.1 346 40.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.2e-60 236.1 346 40.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.2e-60 235.7 307 41.7
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.5e-60 235.3 226 50.9
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-59 234.2 302 45.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 2.1e-59 233.4 298 46.0
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.6e-59 232.6 308 46.1
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 8.0e-59 231.5 327 43.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.0e-58 231.1 354 40.1
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.0e-58 231.1 300 43.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.8e-58 230.3 334 41.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 3.0e-58 229.6 224 49.6
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.7e-58 228.4 237 48.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 6.7e-58 228.4 313 44.4
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.2e-57 227.6 329 42.2
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.5e-57 227.3 320 45.9
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 6.3e-56 221.9 239 48.1
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 8.2e-56 221.5 304 41.8
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 2.4e-55 219.9 313 42.8
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 9.1e-55 218.0 232 47.4
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.7e-54 216.5 330 39.4
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.5e-52 210.7 234 46.2
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.9e-52 210.3 169 65.1
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.2e-51 207.6 257 43.2
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.1e-51 206.8 304 39.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.0e-50 204.5 152 65.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.8e-50 203.8 303 42.6
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.0e-50 203.0 239 43.1
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 6.8e-50 201.8 248 46.4
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.0e-49 200.3 327 36.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 9.8e-49 198.0 319 40.1
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.3e-48 197.6 215 48.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.7e-48 197.2 346 36.1
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.2e-48 196.8 304 39.1
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.7e-46 188.3 314 37.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.0e-45 188.0 303 38.3
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.0e-45 188.0 303 38.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 6.5e-45 185.3 303 38.0
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.2e-44 183.0 229 43.2
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.5e-44 182.2 241 42.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.3e-42 176.8 387 31.0
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 7.8e-38 161.8 315 36.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.3e-36 156.4 282 34.8
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 2.8e-35 153.3 120 56.7
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.0e-34 151.4 130 51.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.2e-33 147.9 198 40.9
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.4e-33 146.4 146 46.6
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.2e-27 127.9 193 38.9
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.1e-26 124.8 138 41.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.1e-26 124.8 140 45.7
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.2e-23 113.2 153 44.4
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 9.2e-23 111.7 232 31.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 6.0e-22 109.0 117 47.9
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.5e-20 104.4 198 35.4
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 4.3e-20 102.8 112 42.0
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.6e-20 102.4 142 40.8
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.8e-19 100.1 85 52.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.4e-17 93.2 160 39.4
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-16 91.3 87 52.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 8.3e-16 88.6 278 29.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 5.4e-15 85.9 213 29.6
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.2e-14 84.7 91 45.1
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.7e-14 83.6 164 32.3
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.7e-14 83.6 119 37.8
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.1e-12 78.2 150 33.3
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.3e-12 76.3 108 37.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 9.5e-12 75.1 120 39.2
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.4e-10 71.2 116 35.3
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.2e-09 68.2 55 52.7
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 4.4e-09 66.2 56 50.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.7e-08 64.3 101 39.6
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.2e-06 58.2 42 59.5
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 1.2e-06 58.2 52 51.9


User provided reference genes

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