Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 1.2e-291 1005.7 498 100.0
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 3.7e-248 861.3 501 86.0
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 3.7e-248 861.3 501 85.8
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 8.2e-248 860.1 501 85.8
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 7.6e-246 853.6 501 86.0
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 1.9e-244 849.0 503 85.1
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 2.2e-216 755.7 509 75.4
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 3.7e-216 755.0 500 77.6
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 8.5e-213 743.8 499 75.6
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 1.9e-212 742.7 499 76.4
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 5.5e-212 741.1 499 76.4
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 5.4e-175 618.2 502 64.5
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 2.1e-147 526.6 501 54.5
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 1.1e-143 514.2 515 53.4
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.8e-141 506.9 517 50.7
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 5.6e-140 501.9 512 52.5
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 2.4e-138 496.5 517 50.9
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 1.0e-136 491.1 508 50.2
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 2.9e-136 489.6 501 52.3
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 4.2e-135 485.7 509 51.7
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 5.5e-135 485.3 506 52.2
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 5.5e-135 485.3 509 51.1
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 1.2e-134 484.2 508 51.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.6e-134 483.8 506 52.2
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 7.9e-134 481.5 508 49.4
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.8e-133 480.3 504 52.2
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 3.3e-132 476.1 507 49.9
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 5.7e-132 475.3 508 49.8
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 3.7e-131 472.6 509 50.1
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 2.0e-129 466.8 512 50.0
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 1.9e-127 460.3 428 56.1
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 2.5e-127 459.9 517 48.4
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.2e-127 459.5 504 51.4
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.6e-126 457.2 496 50.4
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 2.7e-126 456.4 505 48.7
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.7e-126 456.4 496 50.2
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 3.5e-126 456.1 511 48.5
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 7.9e-126 454.9 500 49.0
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 1.8e-125 453.8 497 47.7
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 8.7e-125 451.4 496 47.8
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.1e-124 451.1 503 49.7
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 7.4e-124 448.4 516 47.5
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 9.7e-124 448.0 479 50.3
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 2.2e-123 446.8 523 47.0
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 6.9e-122 441.8 508 46.9
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 2.9e-120 436.4 514 47.9
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 8.5e-120 434.9 507 48.1
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 8.5e-120 434.9 505 50.3
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 2.5e-119 433.3 504 48.4
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 1.8e-117 427.2 507 46.5
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 1.1e-116 424.5 423 51.3
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 3.3e-116 422.9 507 47.9
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 1.8e-114 417.2 512 46.7
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 3.4e-113 412.9 505 47.7
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 7.7e-113 411.8 506 44.9
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.0e-112 411.4 517 46.2
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 3.8e-112 409.5 418 51.4
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 7.9e-110 401.7 427 48.9
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 2.3e-109 400.2 500 46.6
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.0e-106 388.7 424 50.5
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.6e-105 386.7 424 50.2
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 2.6e-105 386.7 507 45.6
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 1.0e-104 384.8 515 43.5
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.5e-103 380.9 446 45.3
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 2.1e-102 377.1 414 49.8
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 4.4e-100 369.4 508 40.9
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 3.1e-90 336.7 418 44.3
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 4.1e-90 336.3 409 44.7
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 6.5e-88 328.9 421 44.9
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 8.5e-88 328.6 512 40.2
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.2e-87 325.5 320 53.1
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.7e-83 314.3 362 50.3
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 9.2e-74 282.0 251 55.8
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 8.6e-72 275.4 460 37.6
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 2.8e-70 270.4 557 32.7
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 1.6e-65 254.6 564 31.6
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 3.0e-64 250.4 516 34.7
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 1.1e-58 231.9 498 32.9
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 3.6e-38 163.7 479 27.3
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.7e-35 154.8 164 50.6
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.2e-28 132.1 449 25.8
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 5.5e-26 123.2 127 49.6
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 5.5e-10 70.1 152 32.2
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 3.0e-08 64.3 183 31.1


User provided reference genes

Program Settings