Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12581 Brassica carinata HOM05D001402 ORTHO05D001302 9.6e-36 152.9 74 100.0
BcaC01g03731 Brassica carinata HOM05D001402 ORTHO05D001302 2.5e-20 101.7 64 84.4
Thhalv10020677m.g Eutrema salsugineum HOM05D001402 ORTHO05D001302 1.3e-19 99.4 68 79.4
BolC3t17201H Brassica oleracea HOM05D001402 ORTHO05D001302 2.1e-19 98.6 64 82.8
BraA03t13192Z Brassica rapa HOM05D001402 ORTHO05D001302 2.1e-19 98.6 64 82.8
BraA03t13194Z Brassica rapa HOM05D001402 ORTHO05D001302 2.1e-19 98.6 64 82.8
C03p49200 Brassica napus HOM05D001402 ORTHO05D001302 2.8e-19 98.2 63 82.5
A05p32020 Brassica napus HOM05D001402 ORTHO05D001302 1.8e-18 95.5 67 77.6
C05p48540 Brassica napus HOM05D001402 ORTHO05D001302 4.0e-18 94.4 67 76.1
BolC5t33590H Brassica oleracea HOM05D001402 ORTHO05D001302 4.0e-18 94.4 67 76.1
Sp3g15920 Schrenkiella parvula HOM05D001402 ORTHO05D001302 4.0e-18 94.4 67 76.1
BraA05t22033Z Brassica rapa HOM05D001402 ORTHO05D001302 1.2e-17 92.8 67 76.1
BcaB04g18964 Brassica carinata HOM05D001402 ORTHO05D001302 2.0e-17 92.0 67 76.1
BraA03t13189Z Brassica rapa HOM05D001402 ORTHO05D001302 5.8e-17 90.5 63 82.5
AL3G30960 Arabidopsis lyrata HOM05D001402 ORTHO05D001302 9.9e-17 89.7 68 72.1
AT3G17800 Arabidopsis thaliana HOM05D001402 ORTHO05D001302 1.7e-16 89.0 69 71.0
BcaNung05882 Brassica carinata HOM05D001402 ORTHO05D001302 2.2e-16 88.6 68 72.1
A03p40400 Brassica napus HOM05D001402 ORTHO05D001302 2.9e-16 88.2 62 77.4
CARHR093150 Cardamine hirsuta HOM05D001402 ORTHO05D001302 5.4e-15 84.0 69 66.7
Aa31LG8G4680 Aethionema arabicum HOM05D001402 ORTHO05D001302 7.1e-15 83.6 66 69.7
Carub.0003s1751 Capsella rubella HOM05D001402 ORTHO05D001302 1.6e-14 82.4 68 66.2
C09p45280 Brassica napus HOM05D001402 ORTHO05D001302 2.1e-14 82.0 63 74.6
COL.COLO4_20592 Corchorus olitorius HOM05D001402 ORTHO05D001302 6.2e-11 70.5 51 72.5
Gohir.D02G119600 Gossypium hirsutum HOM05D001402 ORTHO05D001302 8.1e-11 70.1 76 53.9
Gorai.005G134400 Gossypium raimondii HOM05D001402 ORTHO05D001302 8.1e-11 70.1 76 53.9
THA.LOC104820333 Tarenaya hassleriana HOM05D001402 ORTHO05D001302 1.1e-10 69.7 72 58.3
Eucgr.H00558 Eucalyptus grandis HOM05D001402 ORTHO05D001302 2.4e-10 68.6 51 70.6
Aa31LG10G5330 Aethionema arabicum HOM05D001402 ORTHO05D001302 3.1e-10 68.2 76 52.6
PGR083G2564 Punica granatum HOM05D001402 ORTHO05D001302 3.1e-10 68.2 78 50.0
Gohir.A03G072400 Gossypium hirsutum HOM05D001402 ORTHO05D001302 4.0e-10 67.8 76 53.9
Dinv09073 Davidia involucrata HOM05D001402 ORTHO05D001302 9.0e-10 66.6 60 63.3
Ciclev10020337m.g Citrus clementina HOM05D001402 ORTHO05D001302 1.2e-09 66.2 51 70.6
CAN.G637.35 Capsicum annuum HOM05D001402 ORTHO05D001302 1.5e-09 65.9 60 61.7
arahy.Tifrunner.gnm1.ann1.8GB1FD Arachis hypogaea HOM05D001402 ORTHO05D001302 2.0e-09 65.5 67 52.2
MD06G1233300 Malus domestica HOM05D001402 ORTHO05D001302 2.0e-09 65.5 63 58.7
VMungo0464G0675 Vigna mungo HOM05D001402 ORTHO05D001302 2.0e-09 65.5 63 58.7
Cc04_g09280 Coffea canephora HOM05D001402 ORTHO05D001302 3.4e-09 64.7 57 63.2
arahy.Tifrunner.gnm1.ann1.6C0LG0 Arachis hypogaea HOM05D001402 ORTHO05D001302 5.8e-09 63.9 67 50.7
Prupe.5G237700 Prunus persica HOM05D001402 ORTHO05D001302 5.8e-09 63.9 73 52.1
Atru.chr9.1605 Acer truncatum HOM05D001402 ORTHO05D001302 7.6e-09 63.5 51 66.7
Lalb_Chr05g0221501 Lupinus albus HOM05D001402 ORTHO05D001302 7.6e-09 63.5 59 57.6
Actinidia35141 Actinidia chinensis HOM05D001402 ORTHO05D001302 1.0e-08 63.2 62 59.7
CSS0001490 Camellia sinensis var. sinensis HOM05D001402 ORTHO05D001302 1.0e-08 63.2 60 55.0
CSS0038662 Camellia sinensis var. sinensis HOM05D001402 ORTHO05D001302 1.0e-08 63.2 60 55.0
Glyma.09G171900 Glycine max HOM05D001402 ORTHO05D001302 1.0e-08 63.2 58 60.3
Peaxi162Scf00171g00936 Petunia axillaris HOM05D001402 ORTHO05D001302 1.0e-08 63.2 56 57.1
Potri.015G031200 Populus trichocarpa HOM05D001402 ORTHO05D001302 1.0e-08 63.2 47 68.1
Glyma.07G106300 Glycine max HOM05D001402 ORTHO05D001302 1.3e-08 62.8 55 58.2
Psat7g000760 Pisum sativum HOM05D001402 ORTHO05D001302 1.3e-08 62.8 54 61.1
GSVIVG01012909001 Vitis vinifera HOM05D001402 ORTHO05D001302 1.3e-08 62.8 66 54.5
Cfa020643 Carpinus fangiana HOM05D001402 ORTHO05D001302 1.7e-08 62.4 50 66.0
Haze_18925 Corylus avellana HOM05D001402 ORTHO05D001302 1.7e-08 62.4 50 66.0
Oeu052492.1 Olea europaea HOM05D001402 ORTHO05D001302 1.7e-08 62.4 57 57.9
CANSAT80G1939 Cannabis sativa HOM05D001402 ORTHO05D001302 2.2e-08 62.0 47 66.0
CiPaw.15G148100 Carya illinoinensis HOM05D001402 ORTHO05D001302 2.9e-08 61.6 48 68.8
Lj4g0021897 Lotus japonicus HOM05D001402 ORTHO05D001302 2.9e-08 61.6 55 60.0
LjContig00484g0014946 Lotus japonicus HOM05D001402 ORTHO05D001302 2.9e-08 61.6 55 60.0
Solyc03g098000.3 Solanum lycopersicum HOM05D001402 ORTHO05D001302 2.9e-08 61.6 59 59.3
Sopen03g028710 Solanum pennellii HOM05D001402 ORTHO05D001302 2.9e-08 61.6 59 59.3
Migut.I00583 Erythranthe guttata HOM05D001402 ORTHO05D001302 3.8e-08 61.2 61 54.1
FvH4_5g17760 Fragaria vesca HOM05D001402 ORTHO05D001302 3.8e-08 61.2 49 63.3
FAN04G1584 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.8e-08 61.2 49 63.3
FAN08G2268 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.8e-08 61.2 49 63.3
FAN13G1384 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.8e-08 61.2 49 63.3
FAN18G0265 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.8e-08 61.2 49 63.3
Ca_17173_v3 Cicer arietinum L. HOM05D001402 ORTHO05D001302 4.9e-08 60.8 50 64.0
Hma1.2p1_0471F.1_g159340 Hydrangea macrophylla HOM05D001402 ORTHO05D001302 4.9e-08 60.8 49 65.3
MD14G1240100 Malus domestica HOM05D001402 ORTHO05D001302 4.9e-08 60.8 46 69.6
Thecc.03G063300 Theobroma cacao HOM05D001402 ORTHO05D001302 4.9e-08 60.8 49 63.3
CiPaw.16G097800 Carya illinoinensis HOM05D001402 ORTHO05D001302 6.5e-08 60.5 64 53.1
Duzib084G0988 Durio zibethinus HOM05D001402 ORTHO05D001302 6.5e-08 60.5 49 65.3
Nitab4.5_0006110g0040 Nicotiana tabacum HOM05D001402 ORTHO05D001302 6.5e-08 60.5 60 53.3
Potri.012G042400 Populus trichocarpa HOM05D001402 ORTHO05D001302 6.5e-08 60.5 59 59.3
QL10p031798 Quercus lobata HOM05D001402 ORTHO05D001302 8.4e-08 60.1 48 66.7
PGSC0003DMG400033689 Solanum tuberosum HOM05D001402 ORTHO05D001302 8.4e-08 60.1 59 57.6
Thhalv10011507m.g Eutrema salsugineum HOM05D001402 ORTHO05D001302 1.1e-07 59.7 79 49.4
Sc10g0009030 Simmondsia chinensis HOM05D001402 ORTHO05D001302 1.1e-07 59.7 58 58.6
CARHR038080 Cardamine hirsuta HOM05D001402 ORTHO05D001302 1.4e-07 59.3 80 47.5
Nitab4.5_0000430g0070 Nicotiana tabacum HOM05D001402 ORTHO05D001302 1.4e-07 59.3 60 53.3
Sabra15G0026100 Salix brachista HOM05D001402 ORTHO05D001302 1.4e-07 59.3 47 63.8
SabraUnG0006500 Salix brachista HOM05D001402 ORTHO05D001302 1.4e-07 59.3 47 63.8
Cfa020640 Carpinus fangiana HOM05D001402 ORTHO05D001302 1.9e-07 58.9 50 64.0
Nn4g24494 Nelumbo nucifera HOM05D001402 ORTHO05D001302 1.9e-07 58.9 60 51.7
TAR374G1331 Trochodendron aralioides HOM05D001402 ORTHO05D001302 1.9e-07 58.9 47 68.1
A05p21030 Brassica napus HOM05D001402 ORTHO05D001302 2.5e-07 58.5 75 50.7
BraA05t21007Z Brassica rapa HOM05D001402 ORTHO05D001302 2.5e-07 58.5 75 50.7
Gohir.A12G271200 Gossypium hirsutum HOM05D001402 ORTHO05D001302 3.2e-07 58.2 69 50.7
Gorai.008G292100 Gossypium raimondii HOM05D001402 ORTHO05D001302 3.2e-07 58.2 69 50.7
Lj5C163G9 Lonicera japonica HOM05D001402 ORTHO05D001302 3.2e-07 58.2 59 55.9
Oeu058746.1 Olea europaea HOM05D001402 ORTHO05D001302 3.2e-07 58.2 47 63.8
PSO478G1757 Papaver somniferum HOM05D001402 ORTHO05D001302 3.2e-07 58.2 61 52.5
PSO782G0546 Papaver somniferum HOM05D001402 ORTHO05D001302 3.2e-07 58.2 61 52.5
Phvul.004G147201 Phaseolus vulgaris HOM05D001402 ORTHO05D001302 3.2e-07 58.2 55 54.5
TAR622G0819 Trochodendron aralioides HOM05D001402 ORTHO05D001302 3.2e-07 58.2 47 66.0
Ca_25974_v3 Cicer arietinum L. HOM05D001402 ORTHO05D001302 4.2e-07 57.8 63 49.2
Glyma.05G247700 Glycine max HOM05D001402 ORTHO05D001302 4.2e-07 57.8 63 54.0
TPR.G14849 Trifolium pratense HOM05D001402 ORTHO05D001302 4.2e-07 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.CDT3L9 Arachis hypogaea HOM05D001402 ORTHO05D001302 5.5e-07 57.4 61 52.5
arahy.Tifrunner.gnm1.ann1.R9FD0N Arachis hypogaea HOM05D001402 ORTHO05D001302 5.5e-07 57.4 61 52.5
BcaC05g27570 Brassica carinata HOM05D001402 ORTHO05D001302 7.1e-07 57.0 79 48.1
C05p35530 Brassica napus HOM05D001402 ORTHO05D001302 7.1e-07 57.0 79 48.1
BolC5t32265H Brassica oleracea HOM05D001402 ORTHO05D001302 7.1e-07 57.0 79 48.1
Lalb_Chr09g0330241 Lupinus albus HOM05D001402 ORTHO05D001302 7.1e-07 57.0 62 54.8
TWI15G0771 Tripterygium wilfordii HOM05D001402 ORTHO05D001302 7.1e-07 57.0 74 47.3
DCAR_015169 Daucus carota HOM05D001402 ORTHO05D001302 9.3e-07 56.6 65 49.2
RcHm_v2.0_Chr7g0177861 Rosa chinensis HOM05D001402 ORTHO05D001302 9.3e-07 56.6 65 50.8
Sp1g35400 Schrenkiella parvula HOM05D001402 ORTHO05D001302 9.3e-07 56.6 55 50.9
Glyma.08G056200 Glycine max HOM05D001402 ORTHO05D001302 1.2e-06 56.2 63 50.8
Carub.0001s3758 Capsella rubella HOM05D001402 ORTHO05D001302 1.6e-06 55.8 55 50.9
Lj2g0002474 Lotus japonicus HOM05D001402 ORTHO05D001302 1.6e-06 55.8 63 49.2
Manes.14G173400 Manihot esculenta HOM05D001402 ORTHO05D001302 1.6e-06 55.8 45 62.2
Sabra12G0029600 Salix brachista HOM05D001402 ORTHO05D001302 1.6e-06 55.8 47 61.7
AL1G55080 Arabidopsis lyrata HOM05D001402 ORTHO05D001302 2.1e-06 55.5 55 49.1
AUR62042458 Chenopodium quinoa HOM05D001402 ORTHO05D001302 2.1e-06 55.5 46 60.9
Gohir.D12G271700 Gossypium hirsutum HOM05D001402 ORTHO05D001302 2.7e-06 55.1 69 49.3
Hund06729 Selenicereus undatus HOM05D001402 ORTHO05D001302 2.7e-06 55.1 47 59.6
TPR.G1462 Trifolium pratense HOM05D001402 ORTHO05D001302 2.7e-06 55.1 59 50.8
Medtr6g071465 Medicago truncatula HOM05D001402 ORTHO05D001302 6.0e-06 53.9 63 49.2
Os03g0717900 Oryza sativa ssp. japonica HOM05D001402 ORTHO05D001302 6.0e-06 53.9 53 56.6
VMungo0251G3130 Vigna mungo HOM05D001402 ORTHO05D001302 6.0e-06 53.9 59 49.2
EL10Ac8g19488 Beta vulgaris HOM05D001402 ORTHO05D001302 7.9e-06 53.5 65 47.7
HanXRQChr09g0266621 Helianthus annuus HOM05D001402 ORTHO05D001302 7.9e-06 53.5 68 48.5
Phvul.002G331900 Phaseolus vulgaris HOM05D001402 ORTHO05D001302 7.9e-06 53.5 63 47.6
vmacro16400 Vaccinium macrocarpon HOM05D001402 ORTHO05D001302 7.9e-06 53.5 59 52.5


User provided reference genes

Program Settings