Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12553 Brassica carinata HOM05D006491 ORTHO05D008412 1.7e-174 615.9 312 100.0
BolC8t48733H Brassica oleracea HOM05D006491 ORTHO05D008412 5.6e-162 574.3 311 93.6
C08p10580 Brassica napus HOM05D006491 ORTHO05D008412 9.6e-162 573.5 311 93.2
BcaC07g38308 Brassica carinata HOM05D006491 ORTHO05D008412 3.6e-161 571.6 311 92.9
BraA08t33984Z Brassica rapa HOM05D006491 ORTHO05D008412 1.5e-159 566.2 311 92.0
Thhalv10025588m.g Eutrema salsugineum HOM05D006491 ORTHO05D008412 2.0e-159 565.8 311 91.6
A08p20250 Brassica napus HOM05D006491 ORTHO05D008412 2.6e-159 565.5 311 92.3
Sp7g25960 Schrenkiella parvula HOM05D006491 ORTHO05D008412 3.5e-156 555.1 311 90.4
CARHR235700 Cardamine hirsuta HOM05D006491 ORTHO05D008412 5.6e-154 547.7 307 90.6
Carub.0007s1278 Capsella rubella HOM05D006491 ORTHO05D008412 1.1e-152 543.5 307 89.9
AL7G24610 Arabidopsis lyrata HOM05D006491 ORTHO05D008412 1.2e-151 540.0 309 88.3
Aa31LG3G170 Aethionema arabicum HOM05D006491 ORTHO05D008412 2.2e-134 482.6 308 79.9
AT4G28020 Arabidopsis thaliana HOM05D006491 ORTHO05D008412 3.8e-134 481.9 263 90.9
THA.LOC104817809 Tarenaya hassleriana HOM05D006491 ORTHO05D008412 2.5e-133 479.2 315 78.4
Dinv41291 Davidia involucrata HOM05D006491 ORTHO05D008412 2.0e-114 416.4 339 62.8
Phvul.003G149900 Phaseolus vulgaris HOM05D006491 ORTHO05D008412 5.7e-114 414.8 327 65.4
Ciclev10008637m.g Citrus clementina HOM05D006491 ORTHO05D008412 9.7e-114 414.1 330 65.2
QL02p096111 Quercus lobata HOM05D006491 ORTHO05D008412 2.2e-113 412.9 336 63.7
CiPaw.07G187800 Carya illinoinensis HOM05D006491 ORTHO05D008412 4.8e-113 411.8 335 63.0
COL.COLO4_16079 Corchorus olitorius HOM05D006491 ORTHO05D008412 4.8e-113 411.8 339 61.7
Duzib150G0568 Durio zibethinus HOM05D006491 ORTHO05D008412 4.8e-113 411.8 332 63.3
VMungo1215G2097 Vigna mungo HOM05D006491 ORTHO05D008412 6.3e-113 411.4 322 65.8
arahy.Tifrunner.gnm1.ann1.E3AGAX Arachis hypogaea HOM05D006491 ORTHO05D008412 1.8e-112 409.8 341 63.3
HanXRQChr05g0136551 Helianthus annuus HOM05D006491 ORTHO05D008412 3.1e-112 409.1 310 65.5
Haze_22140 Corylus avellana HOM05D006491 ORTHO05D008412 4.1e-112 408.7 348 60.9
Manes.14G150100 Manihot esculenta HOM05D006491 ORTHO05D008412 4.1e-112 408.7 340 62.4
Potri.018G096900 Populus trichocarpa HOM05D006491 ORTHO05D008412 5.3e-112 408.3 331 63.7
Gohir.D08G096700 Gossypium hirsutum HOM05D006491 ORTHO05D008412 9.1e-112 407.5 324 63.6
Gorai.004G103700 Gossypium raimondii HOM05D006491 ORTHO05D008412 1.5e-111 406.8 324 63.9
Medtr4g129150 Medicago truncatula HOM05D006491 ORTHO05D008412 2.0e-111 406.4 333 63.7
Sabra18G0084000 Salix brachista HOM05D006491 ORTHO05D008412 2.0e-111 406.4 337 62.0
arahy.Tifrunner.gnm1.ann1.1P8XK5 Arachis hypogaea HOM05D006491 ORTHO05D008412 2.6e-111 406.0 341 62.8
Actinidia17330 Actinidia chinensis HOM05D006491 ORTHO05D008412 4.5e-111 405.2 349 61.0
GSVIVG01029103001 Vitis vinifera HOM05D006491 ORTHO05D008412 7.7e-111 404.4 336 61.9
Rhsim03G0262200 Rhododendron simsii HOM05D006491 ORTHO05D008412 1.0e-110 404.1 337 62.3
MD13G1262500 Malus domestica HOM05D006491 ORTHO05D008412 1.3e-110 403.7 330 62.1
Lj4g0007651 Lotus japonicus HOM05D006491 ORTHO05D008412 2.2e-110 402.9 341 62.2
Lalb_Chr13g0300441 Lupinus albus HOM05D006491 ORTHO05D008412 2.2e-110 402.9 332 62.7
Nn2g14424 Nelumbo nucifera HOM05D006491 ORTHO05D008412 2.2e-110 402.9 338 60.9
TPR.G5304 Trifolium pratense HOM05D006491 ORTHO05D008412 2.9e-110 402.5 332 62.0
MSTRG.10725 Avicennia marina HOM05D006491 ORTHO05D008412 3.8e-110 402.1 343 61.8
Ca_21191_v3 Cicer arietinum L. HOM05D006491 ORTHO05D008412 6.5e-110 401.4 333 61.9
Atru.chr7.558 Acer truncatum HOM05D006491 ORTHO05D008412 1.9e-109 399.8 264 74.6
CSS0049223 Camellia sinensis var. sinensis HOM05D006491 ORTHO05D008412 9.4e-109 397.5 338 60.9
Psat4g010880 Pisum sativum HOM05D006491 ORTHO05D008412 1.6e-108 396.7 332 61.1
TAR383G0527 Trochodendron aralioides HOM05D006491 ORTHO05D008412 2.1e-108 396.4 333 61.3
Gohir.A08G070300 Gossypium hirsutum HOM05D006491 ORTHO05D008412 4.7e-108 395.2 324 62.7
TWI63G0546 Tripterygium wilfordii HOM05D006491 ORTHO05D008412 6.1e-108 394.8 336 60.7
Cpa.g.sc450.5 Carica papaya HOM05D006491 ORTHO05D008412 1.0e-107 394.0 360 57.2
Prupe.1G095000 Prunus persica HOM05D006491 ORTHO05D008412 1.0e-107 394.0 335 59.4
Sc14g0001140 Simmondsia chinensis HOM05D006491 ORTHO05D008412 1.4e-107 393.7 320 63.8
ECA236G3989 Erigeron canadensis HOM05D006491 ORTHO05D008412 1.8e-107 393.3 317 63.1
Lsat_1_v5_gn_8_65441 Lactuca sativa HOM05D006491 ORTHO05D008412 1.5e-106 390.2 307 63.2
ATR0580G190 Amborella trichopoda HOM05D006491 ORTHO05D008412 3.3e-106 389.0 327 60.6
Nitab4.5_0000593g0170 Nicotiana tabacum HOM05D006491 ORTHO05D008412 7.4e-106 387.9 331 61.0
Nitab4.5_0003408g0120 Nicotiana tabacum HOM05D006491 ORTHO05D008412 9.7e-106 387.5 337 60.5
CAN.G135.50 Capsicum annuum HOM05D006491 ORTHO05D008412 6.3e-105 384.8 319 62.1
ClCG06G012970 Citrullus lanatus HOM05D006491 ORTHO05D008412 1.8e-104 383.3 330 60.0
FAN22G1104 Fragaria x ananassa HOM05D006491 ORTHO05D008412 1.8e-104 383.3 330 59.7
PGSC0003DMG401027355 Solanum tuberosum HOM05D006491 ORTHO05D008412 2.4e-104 382.9 323 61.3
FAN12G3371 Fragaria x ananassa HOM05D006491 ORTHO05D008412 3.1e-104 382.5 330 60.0
EL10Ac8g18256 Beta vulgaris HOM05D006491 ORTHO05D008412 5.3e-104 381.7 330 59.1
CsaV3_1G029540 Cucumis sativus L. HOM05D006491 ORTHO05D008412 5.3e-104 381.7 328 59.5
RcHm_v2.0_Chr4g0404161 Rosa chinensis HOM05D006491 ORTHO05D008412 7.0e-104 381.3 330 60.0
Ah.09g229650 Amaranthus hybridus HOM05D006491 ORTHO05D008412 9.1e-104 380.9 327 59.6
Aqoxy7G03183 Aquilegia oxysepala HOM05D006491 ORTHO05D008412 9.1e-104 380.9 332 60.2
Os09g0428900 Oryza sativa ssp. japonica HOM05D006491 ORTHO05D008412 9.1e-104 380.9 332 57.8
PGR142G3664 Punica granatum HOM05D006491 ORTHO05D008412 1.2e-103 380.6 334 59.3
Solyc11g007750.3 Solanum lycopersicum HOM05D006491 ORTHO05D008412 2.6e-103 379.4 323 60.7
Sopen11g003610 Solanum pennellii HOM05D006491 ORTHO05D008412 3.5e-103 379.0 323 60.7
Cfa013536 Carpinus fangiana HOM05D006491 ORTHO05D008412 1.0e-102 377.5 283 66.4
MELO3C017512.2 Cucumis melo HOM05D006491 ORTHO05D008412 5.0e-102 375.2 330 58.2
Oeu043515.2 Olea europaea HOM05D006491 ORTHO05D008412 5.0e-102 375.2 394 52.3
CANSAT11G0137 Cannabis sativa HOM05D006491 ORTHO05D008412 1.1e-101 374.0 334 56.0
vmacro06036 Vaccinium macrocarpon HOM05D006491 ORTHO05D008412 9.4e-101 370.9 358 56.4
Zm00001eb313540 Zea mays HOM05D006491 ORTHO05D008412 9.4e-101 370.9 329 60.8
MBI14_g24284_MAGBIO Magnolia biondii HOM05D006491 ORTHO05D008412 1.6e-100 370.2 339 56.0
Thecc.09G163600 Theobroma cacao HOM05D006491 ORTHO05D008412 4.0e-99 365.5 335 57.0
Migut.K00266 Erythranthe guttata HOM05D006491 ORTHO05D008412 6.7e-99 364.8 337 57.6
unitig_62.g23494 Utricularia gibba HOM05D006491 ORTHO05D008412 6.7e-99 364.8 341 56.3
Glyma.17G067500 Glycine max HOM05D006491 ORTHO05D008412 3.3e-98 362.5 333 58.3
PSO782G2884 Papaver somniferum HOM05D006491 ORTHO05D008412 3.7e-97 359.0 329 55.9
PSO063G6711 Papaver somniferum HOM05D006491 ORTHO05D008412 6.3e-97 358.2 329 55.9
Eucgr.C00197 Eucalyptus grandis HOM05D006491 ORTHO05D008412 8.5e-94 347.8 289 61.6
Cc06_g13780 Coffea canephora HOM05D006491 ORTHO05D008412 4.2e-93 345.5 348 54.3
Peaxi162Scf00113g00085 Petunia axillaris HOM05D006491 ORTHO05D008412 4.2e-93 345.5 277 62.5
Actinidia17333 Actinidia chinensis HOM05D006491 ORTHO05D008412 8.3e-89 331.3 237 70.5
Glyma.13G093000 Glycine max HOM05D006491 ORTHO05D008412 2.7e-87 326.2 228 70.2
Hund26385 Selenicereus undatus HOM05D006491 ORTHO05D008412 2.9e-86 322.8 327 54.4
AUR62040289 Chenopodium quinoa HOM05D006491 ORTHO05D008412 2.5e-85 319.7 335 51.0
AUR62039980 Chenopodium quinoa HOM05D006491 ORTHO05D008412 1.6e-84 317.0 330 51.5
Pp3c9_21480 Physcomitrium patens HOM05D006491 ORTHO05D008412 8.0e-84 314.7 369 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1093 Anthoceros agrestis HOM05D006491 ORTHO05D008412 1.2e-82 310.8 319 51.4
Sed0015960 Sechium edule HOM05D006491 ORTHO05D008412 9.8e-82 307.8 270 57.0
SMO358G0273 Selaginella moellendorffii HOM05D006491 ORTHO05D008412 3.7e-81 305.8 325 49.8
Actinidia14076 Actinidia chinensis HOM05D006491 ORTHO05D008412 5.4e-80 302.0 231 68.0
DCAR_017948 Daucus carota HOM05D006491 ORTHO05D008412 3.5e-79 299.3 203 72.4
FAN07G0899 Fragaria x ananassa HOM05D006491 ORTHO05D008412 4.5e-79 298.9 330 51.2
FvH4_4g08360 Fragaria vesca HOM05D006491 ORTHO05D008412 5.9e-79 298.5 202 70.8
Hma1.2p1_0921F.1_g236670 Hydrangea macrophylla HOM05D006491 ORTHO05D008412 1.3e-78 297.4 305 53.8
Actinidia25168 Actinidia chinensis HOM05D006491 ORTHO05D008412 5.0e-78 295.4 179 77.1
Mapoly0045s0079 Marchantia polymorpha HOM05D006491 ORTHO05D008412 5.0e-78 295.4 327 46.8
Lj9A730G48 Lonicera japonica HOM05D006491 ORTHO05D008412 4.1e-72 275.8 171 75.4
CDE05G0295 Ceratophyllum demersum HOM05D006491 ORTHO05D008412 1.9e-69 266.9 282 49.3
SGA_v2.0_scaffold242G44263 Striga asiatica HOM05D006491 ORTHO05D008412 9.5e-69 264.6 296 51.7
Peaxi162Scf00532g00051 Petunia axillaris HOM05D006491 ORTHO05D008412 5.8e-66 255.4 331 45.9
Cre14.g613450 Chlamydomonas reinhardtii HOM05D006491 ORTHO05D008412 3.9e-54 216.1 225 51.6
MCO01G751 Micromonas commoda HOM05D006491 ORTHO05D008412 6.4e-49 198.7 304 40.8
PRCOL_00001913 Prasinoderma coloniale HOM05D006491 ORTHO05D008412 3.3e-45 186.4 305 39.0
SEGI_13660 Sequoiadendron giganteum HOM05D006491 ORTHO05D008412 5.6e-45 185.7 147 61.2
arahy.Tifrunner.gnm1.ann1.6S8GSB Arachis hypogaea HOM05D006491 ORTHO05D008412 1.2e-44 184.5 158 64.6
MELO3C026731.2 Cucumis melo HOM05D006491 ORTHO05D008412 2.8e-36 156.8 140 58.6
MCO14G289 Micromonas commoda HOM05D006491 ORTHO05D008412 5.8e-34 149.1 158 49.4
SEGI_21199 Sequoiadendron giganteum HOM05D006491 ORTHO05D008412 2.7e-31 140.2 190 43.7
SGA_v2.0_scaffold242G44258 Striga asiatica HOM05D006491 ORTHO05D008412 1.2e-23 114.8 99 63.6
Hma1.2p1_1576F.1_g291650 Hydrangea macrophylla HOM05D006491 ORTHO05D008412 4.5e-10 69.7 48 66.7
Duzib168G0391 Durio zibethinus HOM05D006491 ORTHO05D008412 7.6e-10 68.9 104 39.4
GSVIVG01029402001 Vitis vinifera HOM05D006491 ORTHO05D008412 7.6e-10 68.9 55 58.2


User provided reference genes

Program Settings