Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 2.4e-99 365.5 186 100.0
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 1.4e-91 339.7 186 94.6
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 1.4e-91 339.7 186 94.6
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 4.5e-90 334.7 188 93.6
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 4.6e-87 324.7 188 90.4
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 1.8e-86 322.8 188 88.8
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 6.7e-86 320.9 191 86.9
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 8.7e-86 320.5 225 78.7
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 2.5e-85 318.9 199 83.9
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 4.3e-85 318.2 188 88.8
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 1.6e-84 316.2 188 86.7
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 8.1e-84 313.9 202 81.2
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 1.4e-83 313.2 191 85.3
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 6.9e-83 310.8 188 87.2
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.6e-79 299.7 166 94.6
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 9.0e-67 257.3 190 72.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 7.2e-64 247.7 150 83.3
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 1.1e-61 240.4 134 90.3
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.4e-59 233.4 189 65.6
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.4e-59 233.4 189 65.6
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 2.6e-58 229.2 186 70.4
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.0e-57 227.3 188 63.3
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 8.5e-57 224.2 188 63.8
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 1.1e-56 223.8 188 62.2
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 1.4e-56 223.4 186 62.9
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.4e-56 223.4 188 63.3
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.9e-56 223.0 187 63.6
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 4.2e-56 221.9 190 63.7
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 4.2e-56 221.9 188 62.8
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 5.5e-56 221.5 188 63.8
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 9.4e-56 220.7 188 62.2
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 1.6e-55 219.9 188 64.4
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 1.6e-55 219.9 188 60.6
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 2.1e-55 219.5 189 63.0
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 3.6e-55 218.8 188 61.7
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 6.1e-55 218.0 189 63.0
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 7.9e-55 217.6 192 59.9
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 3.9e-54 215.3 191 59.2
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 5.1e-54 214.9 188 60.6
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 1.1e-53 213.8 193 60.1
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 1.5e-53 213.4 189 59.8
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 3.3e-53 212.2 193 58.5
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 7.4e-53 211.1 189 60.3
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 7.4e-53 211.1 190 60.5
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 9.7e-53 210.7 189 60.8
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 9.7e-53 210.7 188 60.6
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 9.7e-53 210.7 188 60.6
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.7e-52 209.9 191 58.6
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 1.7e-52 209.9 188 58.0
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 2.2e-52 209.5 188 60.6
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 2.8e-52 209.1 189 58.7
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.7e-52 208.8 188 60.1
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 4.8e-52 208.4 188 58.5
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 1.4e-51 206.8 188 59.6
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 1.8e-51 206.5 187 57.8
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 2.4e-51 206.1 189 58.7
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 3.1e-51 205.7 188 58.0
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 4.1e-51 205.3 188 57.4
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 5.3e-51 204.9 189 58.2
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 7.0e-51 204.5 188 58.5
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 9.1e-51 204.1 188 58.0
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 2.0e-50 203.0 188 58.0
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 2.6e-50 202.6 188 58.0
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 2.6e-50 202.6 193 61.1
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 7.7e-50 201.1 189 56.6
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.0e-49 200.7 138 72.5
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 1.3e-49 200.3 188 56.9
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 1.7e-49 199.9 178 61.8
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.2e-49 199.5 138 72.5
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 5.0e-49 198.4 192 57.8
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 5.0e-49 198.4 189 59.3
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 4.2e-48 195.3 189 56.6
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 9.4e-48 194.1 188 55.3
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 8.0e-47 191.0 133 72.9
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.4e-46 190.3 188 52.7
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 1.4e-46 190.3 189 52.9
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.4e-46 190.3 188 55.9
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.8e-46 189.9 235 48.5
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 2.3e-46 189.5 139 67.6
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 5.2e-46 188.3 217 52.5
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 8.8e-46 187.6 188 56.9
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.1e-45 187.2 141 65.2
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.5e-45 186.8 141 64.5
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.6e-45 186.0 150 66.7
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 7.4e-45 184.5 190 54.2
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 1.1e-43 180.6 190 53.2
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.4e-43 180.3 210 51.0
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 3.5e-42 175.6 171 56.1
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.3e-41 173.7 190 51.6
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 3.2e-40 169.1 128 60.9
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 5.5e-40 168.3 148 58.1
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 7.2e-40 167.9 188 51.1
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 3.0e-38 162.5 194 49.0
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 4.4e-37 158.7 129 62.0
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 5.7e-37 158.3 190 49.5
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 2.2e-36 156.4 191 46.6
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 2.8e-36 156.0 133 64.7
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 8.3e-36 154.5 150 56.0
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 1.6e-34 150.2 118 62.7
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.0e-33 147.5 209 42.6
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 5.5e-32 141.7 126 60.3
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.6e-31 140.2 93 69.9
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.3e-28 130.6 119 58.0
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 7.7e-26 121.3 123 59.3
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 7.7e-26 121.3 123 59.3
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 8.6e-25 117.9 74 70.3
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 7.2e-24 114.8 184 40.2
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.4e-22 110.5 85 64.7
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 1.5e-21 107.1 224 36.2
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 1.2e-18 97.4 113 54.9
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 2.9e-17 92.8 115 50.4
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 3.9e-17 92.4 191 33.0
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 5.0e-17 92.0 100 50.0
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.9e-08 63.5 117 41.9
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 1.6e-07 60.5 47 63.8
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 2.8e-07 59.7 66 56.1
Cre09.g401150 Chlamydomonas reinhardtii HOM05D006936 ORTHO05D008273 2.3e-06 56.6 135 30.4


User provided reference genes

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