Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12363 Brassica carinata HOM05D006676 ORTHO05D008394 9.1e-68 260.4 158 100.0
BraA01t00181Z Brassica rapa HOM05D006676 ORTHO05D008394 8.3e-29 131.0 185 50.3
BolC3t20221H Brassica oleracea HOM05D006676 ORTHO05D008394 1.1e-28 130.6 190 58.4
BcaC01g00433 Brassica carinata HOM05D006676 ORTHO05D008394 1.8e-28 129.8 186 58.1
C03p79700 Brassica napus HOM05D006676 ORTHO05D008394 1.8e-28 129.8 186 58.1
BcaNung03502 Brassica carinata HOM05D006676 ORTHO05D008394 5.4e-28 128.3 184 51.1
A01p01920 Brassica napus HOM05D006676 ORTHO05D008394 9.2e-28 127.5 187 49.2
Sp7g34680 Schrenkiella parvula HOM05D006676 ORTHO05D008394 1.2e-27 127.1 187 50.8
C01p02080 Brassica napus HOM05D006676 ORTHO05D008394 4.6e-27 125.2 184 50.5
BolC1t00200H Brassica oleracea HOM05D006676 ORTHO05D008394 4.6e-27 125.2 184 50.5
Thhalv10026327m.g Eutrema salsugineum HOM05D006676 ORTHO05D008394 4.6e-27 125.2 196 51.0
BraA08t34206Z Brassica rapa HOM05D006676 ORTHO05D008394 1.0e-26 124.0 188 53.7
BcaB03g12365 Brassica carinata HOM05D006676 ORTHO05D008394 2.3e-26 122.9 63 100.0
AL7G13870 Arabidopsis lyrata HOM05D006676 ORTHO05D008394 5.0e-26 121.7 191 46.6
A08p22510 Brassica napus HOM05D006676 ORTHO05D008394 8.6e-26 120.9 187 57.2
CARHR245420 Cardamine hirsuta HOM05D006676 ORTHO05D008394 1.1e-25 120.6 190 44.7
AT4G37090 Arabidopsis thaliana HOM05D006676 ORTHO05D008394 1.5e-25 120.2 187 47.1
Carub.0007s0328 Capsella rubella HOM05D006676 ORTHO05D008394 3.4e-22 109.0 195 43.1
Aa31LG6G13890 Aethionema arabicum HOM05D006676 ORTHO05D008394 3.3e-17 92.4 174 42.0
Manes.13G131900 Manihot esculenta HOM05D006676 ORTHO05D008394 1.4e-12 77.0 180 37.8
Duzib187G2000 Durio zibethinus HOM05D006676 ORTHO05D008394 4.1e-12 75.5 164 38.4
Rhsim08G0109100 Rhododendron simsii HOM05D006676 ORTHO05D008394 2.1e-11 73.2 51 64.7
MD02G1159200 Malus domestica HOM05D006676 ORTHO05D008394 2.7e-11 72.8 62 54.8
ECA232G0167 Erigeron canadensis HOM05D006676 ORTHO05D008394 3.5e-11 72.4 170 35.3
Migut.K00838 Erythranthe guttata HOM05D006676 ORTHO05D008394 1.7e-10 70.1 58 58.6
Eucgr.H01944 Eucalyptus grandis HOM05D006676 ORTHO05D008394 1.7e-10 70.1 56 58.9
Thecc.01G046000 Theobroma cacao HOM05D006676 ORTHO05D008394 2.3e-10 69.7 165 35.2
Sabra07G0030200 Salix brachista HOM05D001814 ORTHO05D001845 3.0e-10 69.3 65 49.2
CiPaw.01G028300 Carya illinoinensis HOM05D006676 ORTHO05D008394 3.9e-10 68.9 56 57.1
MD00G1067500 Malus domestica HOM05D006676 ORTHO05D008394 3.9e-10 68.9 62 50.0
QL06p044204 Quercus lobata HOM05D006676 ORTHO05D008394 3.9e-10 68.9 176 34.7
CANSAT01G0168 Cannabis sativa HOM05D006676 ORTHO05D008394 6.6e-10 68.2 60 53.3
Dinv39914 Davidia involucrata HOM05D006676 ORTHO05D008394 6.6e-10 68.2 62 54.8
HanXRQChr15g0489591 Helianthus annuus HOM05D006676 ORTHO05D008394 6.6e-10 68.2 168 41.7
Prupe.7G145000 Prunus persica HOM05D006676 ORTHO05D008394 6.6e-10 68.2 61 54.1
Lj7A15T51 Lonicera japonica HOM05D006676 ORTHO05D008394 1.1e-09 67.4 176 35.8
vmacro17885 Vaccinium macrocarpon HOM05D006676 ORTHO05D008394 1.1e-09 67.4 51 62.7
Gohir.D03G019200 Gossypium hirsutum HOM05D006676 ORTHO05D008394 1.5e-09 67.0 168 34.5
Lj2g0022488 Lotus japonicus HOM05D006676 ORTHO05D008394 1.5e-09 67.0 62 51.6
Gorai.003G019600 Gossypium raimondii HOM05D006676 ORTHO05D008394 1.9e-09 66.6 168 33.9
Hma1.2p1_0261F.1_g105020 Hydrangea macrophylla HOM05D006676 ORTHO05D008394 1.9e-09 66.6 178 32.6
FAN23G1040 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.3e-09 65.9 183 32.2
HPP92_004789 Vanilla planifolia HOM05D006676 ORTHO05D008394 3.3e-09 65.9 54 57.4
Ciclev10026596m.g Citrus clementina HOM05D006676 ORTHO05D008394 4.3e-09 65.5 55 56.4
Sopen02g015580 Solanum pennellii HOM05D006676 ORTHO05D008394 4.3e-09 65.5 54 59.3
Ah.02g126080 Amaranthus hybridus HOM05D006676 ORTHO05D008394 5.6e-09 65.1 56 53.6
ClCG02G013070 Citrullus lanatus HOM05D006676 ORTHO05D008394 5.6e-09 65.1 62 53.2
Cpa.g.sc15.74 Carica papaya HOM05D006676 ORTHO05D008394 7.3e-09 64.7 149 34.9
COL.COLO4_22185 Corchorus olitorius HOM05D006676 ORTHO05D008394 7.3e-09 64.7 166 34.9
DCAR_025672 Daucus carota HOM05D006676 ORTHO05D008394 7.3e-09 64.7 124 35.5
Gohir.A02G161300 Gossypium hirsutum HOM05D006676 ORTHO05D008394 7.3e-09 64.7 166 32.5
PGR102G2956 Punica granatum HOM05D006676 ORTHO05D008394 9.5e-09 64.3 171 36.3
Actinidia36526 Actinidia chinensis HOM05D006676 ORTHO05D008394 1.2e-08 63.9 177 39.5
Sc16g0001490 Simmondsia chinensis HOM05D006676 ORTHO05D008394 1.2e-08 63.9 60 50.0
THA.LOC104819832 Tarenaya hassleriana HOM05D006676 ORTHO05D008394 1.2e-08 63.9 48 64.6
Nn6g32155 Nelumbo nucifera HOM05D006676 ORTHO05D008394 1.6e-08 63.5 180 34.4
PSO541G6387 Papaver somniferum HOM05D006676 ORTHO05D008394 1.6e-08 63.5 180 38.9
Hund14112 Selenicereus undatus HOM05D006676 ORTHO05D008394 2.1e-08 63.2 55 52.7
Cfa004230 Carpinus fangiana HOM05D006676 ORTHO05D008394 3.6e-08 62.4 128 33.6
Sed0003061 Sechium edule HOM05D006676 ORTHO05D008394 3.6e-08 62.4 175 34.9
TWI09G1529 Tripterygium wilfordii HOM05D006676 ORTHO05D008394 3.6e-08 62.4 182 33.0
Actinidia12084 Actinidia chinensis HOM05D006676 ORTHO05D008394 4.7e-08 62.0 181 43.1
arahy.Tifrunner.gnm1.ann1.A5DXZZ Arachis hypogaea HOM05D006676 ORTHO05D008394 4.7e-08 62.0 54 55.6
AUR62027231 Chenopodium quinoa HOM05D006676 ORTHO05D008394 4.7e-08 62.0 147 34.7
PSO675G6281 Papaver somniferum HOM05D006676 ORTHO05D008394 4.7e-08 62.0 174 32.2
EL10Ac6g14836 Beta vulgaris HOM05D006676 ORTHO05D008394 1.1e-07 60.8 181 34.3
Cc07_g05420 Coffea canephora HOM05D006676 ORTHO05D008394 1.1e-07 60.8 183 38.8
Sc16g0001500 Simmondsia chinensis HOM05D006676 ORTHO05D008394 1.1e-07 60.8 57 49.1
arahy.Tifrunner.gnm1.ann1.MI0500 Arachis hypogaea HOM05D006676 ORTHO05D008394 1.4e-07 60.5 51 56.9
FAN28G2791 Fragaria x ananassa HOM05D006676 ORTHO05D008394 1.4e-07 60.5 184 36.4
MBI15_g03557_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 1.4e-07 60.5 60 51.7
Ca_24806_v3 Cicer arietinum L. HOM05D006676 ORTHO05D008394 1.8e-07 60.1 177 31.1
Glyma.11G060600 Glycine max HOM05D006676 ORTHO05D008394 1.8e-07 60.1 54 51.9
Medtr5g018550 Medicago truncatula HOM05D006676 ORTHO05D008394 2.3e-07 59.7 184 31.0
Solyc02g065370.3 Solanum lycopersicum HOM05D006676 ORTHO05D008394 2.3e-07 59.7 44 63.6
Zm00001eb206480 Zea mays HOM05D006676 ORTHO05D008394 2.3e-07 59.7 170 30.0
FAN26G0249 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.1e-07 59.3 184 35.3
AUR62003241 Chenopodium quinoa HOM05D006676 ORTHO05D008394 4.0e-07 58.9 142 40.1
Duzib147G0589 Durio zibethinus HOM05D006676 ORTHO05D008394 4.0e-07 58.9 149 36.2
TAR625G0739 Trochodendron aralioides HOM05D006676 ORTHO05D008394 4.0e-07 58.9 165 35.8
CsaV3_2G017150 Cucumis sativus L. HOM05D006676 ORTHO05D008394 8.9e-07 57.8 174 32.8
TPR.G29856 Trifolium pratense HOM05D006676 ORTHO05D008394 1.2e-06 57.4 57 49.1
VMungo1215G3052 Vigna mungo HOM05D006676 ORTHO05D008394 1.2e-06 57.4 54 50.0
Potri.007G034600 Populus trichocarpa HOM05D006676 ORTHO05D008394 1.5e-06 57.0 180 31.7
GSVIVG01004606001 Vitis vinifera HOM05D006676 ORTHO05D008394 1.5e-06 57.0 54 50.0
GSVIVG01005096001 Vitis vinifera HOM05D006676 ORTHO05D008394 1.5e-06 57.0 54 50.0
MSTRG.15406 Avicennia marina HOM05D006676 ORTHO05D008394 2.0e-06 56.6 178 33.1
Dinv26772 Davidia involucrata HOM05D006676 ORTHO05D008394 2.0e-06 56.6 178 31.5
FvH4_1g14550 Fragaria vesca HOM05D006676 ORTHO05D008394 2.0e-06 56.6 184 30.4
Lalb_Chr05g0213091 Lupinus albus HOM05D006676 ORTHO05D008394 2.0e-06 56.6 182 29.7
Psat2g163920 Pisum sativum HOM05D006676 ORTHO05D008394 2.6e-06 56.2 184 32.6
FAN19G1679 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.4e-06 55.8 184 30.4
CDE02G4077 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 4.4e-06 55.5 157 33.8
MBI04_g03667_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 4.4e-06 55.5 147 34.0
arahy.Tifrunner.gnm1.ann1.TQQ6DV Arachis hypogaea HOM05D006676 ORTHO05D008394 5.8e-06 55.1 131 33.6
CAN.G93.2 Capsicum annuum HOM05D006676 ORTHO05D008394 5.8e-06 55.1 47 55.3
Peaxi162Scf00019g02117 Petunia axillaris HOM05D006676 ORTHO05D008394 7.6e-06 54.7 152 42.1
RcHm_v2.0_Chr2g0103301 Rosa chinensis HOM05D006676 ORTHO05D008394 7.6e-06 54.7 182 26.9


User provided reference genes

Program Settings