Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12312 Brassica carinata HOM05D003192 ORTHO05D003596 1.3e-49 199.5 106 100.0
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 4.4e-42 174.5 92 98.9
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.7e-41 172.6 92 97.8
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 5.4e-40 167.5 92 93.5
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 5.4e-40 167.5 92 94.6
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 7.0e-40 167.2 92 93.5
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 3.6e-36 154.8 92 85.9
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 1.8e-35 152.5 92 88.0
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 1.2e-34 149.8 92 83.7
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 3.4e-34 148.3 92 83.7
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 5.7e-34 147.5 92 81.5
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 1.3e-33 146.4 92 82.6
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 7.0e-32 140.6 92 78.3
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 7.8e-31 137.1 92 75.0
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 3.9e-30 134.8 92 77.2
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.2e-25 119.0 97 60.8
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-24 116.7 97 59.8
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.4e-24 116.3 97 59.8
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.9e-24 115.9 97 59.8
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 3.2e-24 115.2 97 58.8
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 7.0e-24 114.0 97 58.8
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 1.2e-23 113.2 97 56.7
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 1.2e-23 113.2 97 56.7
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 2.0e-23 112.5 94 59.6
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 2.7e-23 112.1 97 57.7
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.6e-23 111.3 97 57.7
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.6e-23 111.3 97 57.7
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 2.3e-22 109.0 92 58.7
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 2.3e-22 109.0 100 57.0
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 3.9e-22 108.2 92 59.8
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 6.6e-22 107.5 92 59.8
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.1e-21 106.7 92 58.7
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 1.9e-21 105.9 92 57.6
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 5.6e-21 104.4 91 56.0
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 1.2e-20 103.2 97 51.5
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 2.8e-20 102.1 92 55.4
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 6.2e-20 100.9 97 52.6
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 1.4e-19 99.8 97 54.6
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.8e-19 99.4 97 50.5
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.8e-19 99.4 92 57.6
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 4.0e-19 98.2 94 53.2
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 5.2e-19 97.8 94 52.1
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 1.2e-18 96.7 97 48.5
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.6e-18 95.5 92 53.3
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 3.4e-18 95.1 92 52.2
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 4.4e-18 94.7 91 54.9
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 7.5e-18 94.0 92 53.3
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 9.8e-18 93.6 99 51.5
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.7e-17 92.8 92 53.3
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 2.2e-17 92.4 92 46.7
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 2.2e-17 92.4 103 46.6
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 3.7e-17 91.7 97 45.4
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 3.7e-17 91.7 97 50.5
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 4.9e-17 91.3 99 48.5
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 6.4e-17 90.9 92 45.7
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 6.4e-17 90.9 92 54.3
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 8.3e-17 90.5 92 45.7
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 8.3e-17 90.5 100 49.0
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.1e-16 90.1 99 48.5
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.1e-16 90.1 91 51.6
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.1e-16 90.1 92 52.2
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 1.4e-16 89.7 92 51.1
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 3.2e-16 88.6 92 44.6
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 3.2e-16 88.6 92 50.0
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 3.2e-16 88.6 92 51.1
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.1e-16 88.2 97 44.3
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 5.4e-16 87.8 92 44.6
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 9.2e-16 87.0 99 46.5
HanXRQChr10g0289971 Helianthus annuus HOM05D003192 ORTHO05D003596 9.2e-16 87.0 92 46.7
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 1.6e-15 86.3 92 46.7
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.6e-15 86.3 92 50.0
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.6e-15 86.3 92 50.0
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 2.7e-15 85.5 92 48.9
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.7e-15 85.5 104 49.0
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 2.7e-15 85.5 100 47.0
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.5e-15 85.1 97 44.3
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 3.5e-15 85.1 102 44.1
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 3.5e-15 85.1 96 50.0
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 3.5e-15 85.1 92 45.7
Lsat_1_v5_gn_5_109820 Lactuca sativa HOM05D003192 ORTHO05D003596 4.6e-15 84.7 92 46.7
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 6.0e-15 84.3 100 45.0
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 6.0e-15 84.3 90 45.6
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.7e-14 82.8 96 46.9
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 2.3e-14 82.4 100 45.0
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 3.9e-14 81.6 100 46.0
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 3.9e-14 81.6 100 45.0
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 3.9e-14 81.6 100 46.0
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 6.6e-14 80.9 97 41.2
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 6.6e-14 80.9 92 46.7
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 8.6e-14 80.5 100 41.0
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 1.1e-13 80.1 96 49.0
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.9e-13 79.3 89 47.2
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 2.5e-13 79.0 104 45.2
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 2.5e-13 79.0 97 44.3
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 3.3e-13 78.6 100 41.0
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 3.3e-13 78.6 97 44.3
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 4.3e-13 78.2 92 43.5
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 4.3e-13 78.2 99 46.5
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 5.6e-13 77.8 97 41.2
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 9.5e-13 77.0 91 42.9
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 1.2e-12 76.6 97 40.2
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.2e-12 76.6 97 39.2
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 1.2e-12 76.6 104 43.3
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.2e-12 76.6 92 46.7
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 1.2e-12 76.6 100 39.0
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 1.6e-12 76.3 104 44.2
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 2.1e-12 75.9 100 39.0
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 2.8e-12 75.5 92 40.2
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 2.8e-12 75.5 92 42.4
AUR62017973 Chenopodium quinoa HOM05D003192 ORTHO05D003596 2.8e-12 75.5 93 49.5
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 2.8e-12 75.5 92 41.3
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 2.8e-12 75.5 100 39.0
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 3.6e-12 75.1 92 40.2
Os03g0691500 Oryza sativa ssp. japonica HOM05D003192 ORTHO05D003596 3.6e-12 75.1 101 41.6
TPR.G9507 Trifolium pratense HOM05D003192 ORTHO05D003596 4.7e-12 74.7 97 40.2
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 6.2e-12 74.3 90 48.9
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 6.2e-12 74.3 97 41.2
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 6.2e-12 74.3 97 42.3
ATR0767G239 Amborella trichopoda HOM05D003192 ORTHO05D003596 8.1e-12 73.9 92 43.5
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 8.1e-12 73.9 83 47.0
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 1.4e-11 73.2 92 39.1
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.4e-11 73.2 100 40.0
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.4e-11 73.2 92 37.0
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 1.8e-11 72.8 104 39.4
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 1.8e-11 72.8 104 39.4
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.8e-11 72.8 100 40.0
Ah.03g139960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 2.3e-11 72.4 93 47.3
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 2.3e-11 72.4 97 41.2
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.1e-11 72.0 89 44.9
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 3.1e-11 72.0 97 40.2
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 6.8e-11 70.9 92 42.4
AUR62003664 Chenopodium quinoa HOM05D003192 ORTHO05D003596 6.8e-11 70.9 93 48.4
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 6.8e-11 70.9 96 37.5
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 6.8e-11 70.9 100 40.0
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 8.9e-11 70.5 92 37.0
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 1.2e-10 70.1 97 41.2
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 1.5e-10 69.7 100 39.0
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 5.8e-10 67.8 91 44.0
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 5.8e-10 67.8 92 35.9
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 5.8e-10 67.8 101 35.6
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 9.9e-10 67.0 100 38.0
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 1.3e-09 66.6 92 38.0
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.3e-09 66.6 89 42.7
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 1.7e-09 66.2 100 34.0
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 1.7e-09 66.2 100 41.0
EL10Ac6g15204 Beta vulgaris HOM05D003192 ORTHO05D003596 4.9e-09 64.7 93 44.1
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 2.4e-08 62.4 97 41.2
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.2e-08 62.0 117 39.3
Zm00001eb217110 Zea mays HOM05D003192 ORTHO05D003596 1.6e-07 59.7 92 37.0
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 4.6e-07 58.2 94 35.1
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 1.7e-06 56.2 92 43.5
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 2.3e-06 55.8 101 37.6
Ah.02g123570 Amaranthus hybridus HOM05D003192 ORTHO05D003596 3.0e-06 55.5 92 40.2


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