Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12311 Brassica carinata HOM05D003192 ORTHO05D003596 3.5e-246 854.7 503 100.0
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.9e-192 675.6 599 70.6
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 2.1e-187 659.4 625 67.4
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 3.8e-184 648.7 629 64.1
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.3e-176 623.6 582 68.7
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 2.5e-167 592.8 584 64.6
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 1.2e-166 590.5 675 57.0
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 6.0e-166 588.2 585 64.3
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.1e-146 524.2 668 53.1
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 1.4e-141 507.3 667 52.2
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 4.5e-137 492.3 659 51.7
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 1.4e-130 470.7 667 48.4
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 1.4e-114 417.5 454 59.9
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 2.3e-109 400.2 622 45.7
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 8.9e-85 318.5 672 38.4
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 7.7e-44 182.6 792 27.1
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 7.7e-44 182.6 793 26.5
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 3.6e-41 173.7 673 28.7
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 4.6e-41 173.3 789 25.9
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 6.7e-40 169.5 783 25.8
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 1.5e-39 168.3 676 26.9
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 4.3e-39 166.8 672 26.5
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.7e-38 164.9 672 26.8
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 6.3e-38 162.9 514 29.4
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 5.3e-37 159.8 603 28.5
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 1.2e-36 158.7 665 27.7
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 2.6e-36 157.5 539 28.2
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 8.5e-35 152.5 667 25.5
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.4e-34 151.8 569 27.6
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 5.5e-34 149.8 807 25.2
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 7.2e-34 149.4 650 28.6
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.7e-33 147.5 650 28.5
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 1.0e-32 145.6 663 25.3
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 3.9e-32 143.7 805 25.1
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 6.7e-32 142.9 663 26.4
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 1.1e-31 142.1 792 25.5
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.7e-30 138.3 664 26.7
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 9.1e-29 132.5 807 24.2
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 5.0e-27 126.7 650 27.4
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 3.6e-25 120.6 590 25.3
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 6.1e-25 119.8 646 25.1
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 2.3e-24 117.9 681 25.3
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 3.9e-24 117.1 681 24.7
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 3.7e-22 110.5 530 26.2
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.4e-21 108.6 589 25.1
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 7.0e-21 106.3 656 23.8
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 4.5e-20 103.6 563 23.4
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 2.2e-19 101.3 347 28.5
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 1.1e-18 99.0 515 26.6
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 1.9e-18 98.2 502 26.5
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.6e-17 95.1 741 22.8
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 8.0e-17 92.8 504 26.6
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 8.0e-17 92.8 569 23.4
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 8.0e-17 92.8 346 29.2
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 1.8e-16 91.7 554 25.8
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 2.3e-16 91.3 390 25.9
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 2.3e-16 91.3 584 24.7
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 5.2e-16 90.1 412 26.5
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 8.8e-16 89.4 440 24.8
Lj2P534T19 Lonicera japonica HOM05D003192 ORTHO05D003596 8.8e-16 89.4 521 24.2
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 2.0e-15 88.2 460 25.0
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 2.6e-15 87.8 541 25.0
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 4.4e-15 87.0 544 25.2
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 9.7e-15 85.9 579 23.3
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 1.6e-12 78.6 524 25.8
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 2.7e-12 77.8 184 32.6
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 3.5e-12 77.4 559 25.6
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 5.9e-12 76.6 524 25.6
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 1.0e-11 75.9 374 24.9
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 1.3e-11 75.5 246 25.2
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.9e-11 74.3 412 26.2
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 3.8e-11 73.9 542 21.6
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 5.0e-11 73.6 235 27.7
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 6.5e-11 73.2 416 26.0
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 8.5e-11 72.8 493 25.6
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 1.1e-10 72.4 449 24.3
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.9e-10 71.6 531 24.3
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.9e-10 71.6 385 26.2
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.2e-10 70.5 661 23.4
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 7.2e-10 69.7 708 21.2
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 7.2e-10 69.7 516 22.5
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 7.2e-10 69.7 445 24.7
Duzib264G0894 Durio zibethinus HOM05D003192 ORTHO05D003596 1.2e-09 68.9 195 32.3
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 6.1e-09 66.6 571 25.4
Dinv36931 Davidia involucrata HOM05D003192 ORTHO05D003596 8.0e-09 66.2 536 22.9
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 1.0e-08 65.9 643 21.3
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 1.0e-08 65.9 706 21.7
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 1.8e-08 65.1 570 22.6
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.8e-08 65.1 403 24.6
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 2.3e-08 64.7 517 22.6
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 2.3e-08 64.7 292 25.7
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 4.0e-08 63.9 341 24.6
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 6.8e-08 63.2 510 24.5
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 6.8e-08 63.2 422 23.5
Duzib264G0048 Durio zibethinus HOM05D003192 ORTHO05D003596 8.8e-08 62.8 135 35.6
TAR636G1409 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.2e-07 62.4 78 44.9
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 5.7e-07 60.1 223 25.6
Glyma.09G199166 Glycine max HOM05D003192 ORTHO05D003596 2.8e-06 57.8 88 37.5
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 6.3e-06 56.6 578 23.9


User provided reference genes

Program Settings